Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.88□□□□□ -1.63
MSX2P35548 AC009238.2-201ENST00000431026 355 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 HLA-DPA3-207ENST00000454398 229 ntBASIC4.88□□□□□ -1.63
MSX2P35548 PMCHL2-203ENST00000457791 237 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC079168.1-201ENST00000458741 345 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.88□□□□□ -1.63
MSX2P35548 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 RNA5SP249-201ENST00000516127 99 ntBASIC4.88□□□□□ -1.63
MSX2P35548 RNU6-150P-201ENST00000516237 95 ntBASIC4.88□□□□□ -1.63
MSX2P35548 Y_RNA.693-201ENST00000516641 110 ntBASIC4.88□□□□□ -1.63
MSX2P35548 RN7SKP283-201ENST00000517197 270 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AP003467.2-201ENST00000520175 319 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.88□□□□□ -1.63
MSX2P35548 AP003122.4-201ENST00000530980 758 ntBASIC4.88□□□□□ -1.63
MSX2P35548 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.88□□□□□ -1.63
MSX2P35548 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.88□□□□□ -1.63
MSX2P35548 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.88□□□□□ -1.63
MSX2P35548 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.88□□□□□ -1.63
MSX2P35548 AC018552.3-201ENST00000567416 561 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.88□□□□□ -1.63
MSX2P35548 AC025678.1-201ENST00000567861 338 ntBASIC4.88□□□□□ -1.63
MSX2P35548 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 MIR3614-201ENST00000581261 86 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.88□□□□□ -1.63
MSX2P35548 AC010680.3-201ENST00000604215 520 ntBASIC4.88□□□□□ -1.63
MSX2P35548 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 AC118658.2-201ENST00000618697 459 ntBASIC4.88□□□□□ -1.63
MSX2P35548 CR392039.4-201ENST00000624968 501 ntBASIC4.88□□□□□ -1.63
MSX2P35548 PISRT1-201ENST00000626175 531 ntBASIC4.88□□□□□ -1.63
MSX2P35548 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX2P35548 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX2P35548 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX2P35548 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
MSX2P35548 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 Y_RNA.1-201ENST00000352915 104 ntBASIC4.87□□□□□ -1.63
MSX2P35548 RNU6-251P-201ENST00000363235 104 ntBASIC4.87□□□□□ -1.63
MSX2P35548 RNU6-777P-201ENST00000364265 104 ntBASIC4.87□□□□□ -1.63
MSX2P35548 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 RNU6-877P-201ENST00000383868 107 ntBASIC4.87□□□□□ -1.63
MSX2P35548 MIR105-1-201ENST00000385222 81 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AL356057.2-201ENST00000403318 432 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.87□□□□□ -1.63
MSX2P35548 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 AL391987.1-201ENST00000441025 200 ntBASIC4.87□□□□□ -1.63
MSX2P35548 GAPDHP25-201ENST00000447061 1001 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC105399.1-202ENST00000447303 205 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX2P35548 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 NDUFA5P7-201ENST00000452914 242 ntBASIC4.87□□□□□ -1.63
MSX2P35548 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 Z82190.1-201ENST00000454534 490 ntBASIC4.87□□□□□ -1.63
MSX2P35548 MTCO3P20-201ENST00000454926 688 ntBASIC4.87□□□□□ -1.63
MSX2P35548 RPL37P3-201ENST00000456825 293 ntBASIC4.87□□□□□ -1.63
MSX2P35548 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 RPL21P71-201ENST00000465598 459 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC090686.1-201ENST00000481577 749 ntBASIC4.87□□□□□ -1.63
MSX2P35548 RN7SL214P-201ENST00000487317 265 ntBASIC4.87□□□□□ -1.63
MSX2P35548 MTCO3P9-201ENST00000506989 781 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.87□□□□□ -1.63
MSX2P35548 RNA5SP373-201ENST00000517271 95 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC4.87□□□□□ -1.63
MSX2P35548 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 COX6B1P6-201ENST00000522347 255 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 TRIM77BP-201ENST00000524985 1119 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 CENPUP1-201ENST00000526649 1202 ntBASIC4.87□□□□□ -1.63
MSX2P35548 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.87□□□□□ -1.63
MSX2P35548 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.87□□□□□ -1.63
MSX2P35548 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 AL512310.1-201ENST00000548639 172 ntBASIC4.87□□□□□ -1.63
MSX2P35548 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 AL512360.1-201ENST00000555346 234 ntBASIC4.87□□□□□ -1.63
MSX2P35548 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX2P35548 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX2P35548 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.87□□□□□ -1.63
MSX2P35548 BNIP3P11-201ENST00000603878 563 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms