Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RN7SKP281-201ENST00000410472 352 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 AC011933.1-201ENST00000413334 321 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 Z99755.1-201ENST00000414048 380 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.61□□□□□ -1.51
COL8A1P27658 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 RPS24P8-201ENST00000431490 402 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 AL359265.2-201ENST00000434367 631 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.61□□□□□ -1.51
COL8A1P27658 SDAD1P2-201ENST00000441308 2028 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC5.61□□□□□ -1.51
COL8A1P27658 RPL21P133-201ENST00000443666 476 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 HMGB3P21-201ENST00000452483 547 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 MTCO3P8-201ENST00000453691 755 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 AL133351.3-201ENST00000454998 193 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.61□□□□□ -1.51
COL8A1P27658 AC011225.1-201ENST00000457751 369 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 AC245028.2-201ENST00000458673 253 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 SIAH1P1-201ENST00000479411 923 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 AC083829.1-201ENST00000503756 657 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 RNU6-1334P-201ENST00000516032 105 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 AC011979.2-201ENST00000527568 352 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.61□□□□□ -1.51
COL8A1P27658 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 CYP2G2P-201ENST00000594920 1485 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC5.61□□□□□ -1.51
COL8A1P27658 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 AC016251.2-201ENST00000623393 3089 ntBASIC5.61□□□□□ -1.51
COL8A1P27658 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC5.61□□□□□ -1.51
COL8A1P27658 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL8A1P27658 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC093909.5-201ENST00000621839 1799 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 AC007996.1-201ENST00000620414 2821 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 Y_RNA.170-201ENST00000363746 110 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 Y_RNA.314-201ENST00000365114 102 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL8A1P27658 RPS3AP2-201ENST00000407190 754 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 OR3A2-201ENST00000408891 1076 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC5.6□□□□□ -1.51
COL8A1P27658 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
COL8A1P27658 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.6□□□□□ -1.51
COL8A1P27658 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 RPS3AP12-201ENST00000443616 753 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 RPL23AP43-201ENST00000446445 471 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 RPL7P49-201ENST00000471402 708 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC055855.1-201ENST00000489563 579 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC096754.1-201ENST00000508904 818 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.6□□□□□ -1.51
COL8A1P27658 RNU6-1278P-201ENST00000516130 107 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 SCARNA5-201ENST00000516201 276 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 RN7SKP98-201ENST00000517070 156 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AP003396.4-201ENST00000527574 265 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 HIGD1AP5-201ENST00000529959 259 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC022404.1-201ENST00000555320 273 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC011494.1-201ENST00000596454 237 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.6□□□□□ -1.51
COL8A1P27658 AC068768.2-201ENST00000602352 343 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC068790.3-201ENST00000602988 553 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AP001823.1-201ENST00000604056 1003 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC133644.2-201ENST00000608142 540 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.6□□□□□ -1.51
COL8A1P27658 AL445363.3-201ENST00000623080 671 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 U6.101-201ENST00000637707 76 ntBASIC5.6□□□□□ -1.51
COL8A1P27658 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms