Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNA5SP125-201ENST00000364843 120 ntBASIC10.32□□□□□ -0.76
MSH5O43196 MIR138-2-201ENST00000384916 84 ntBASIC10.32□□□□□ -0.76
MSH5O43196 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC10.32□□□□□ -0.76
MSH5O43196 AC009988.1-201ENST00000434988 310 ntTSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 PPIAP7-201ENST00000454070 489 ntBASIC10.32□□□□□ -0.76
MSH5O43196 RPL12P39-201ENST00000455456 496 ntBASIC10.32□□□□□ -0.76
MSH5O43196 RPS18P13-201ENST00000461260 454 ntBASIC10.32□□□□□ -0.76
MSH5O43196 RPL34P22-201ENST00000468193 318 ntBASIC10.32□□□□□ -0.76
MSH5O43196 RN7SL58P-201ENST00000473445 294 ntBASIC10.32□□□□□ -0.76
MSH5O43196 RPL23AP49-201ENST00000492925 468 ntBASIC10.32□□□□□ -0.76
MSH5O43196 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC10.32□□□□□ -0.76
MSH5O43196 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC10.32□□□□□ -0.76
MSH5O43196 RNU6-1114P-201ENST00000516022 107 ntBASIC10.32□□□□□ -0.76
MSH5O43196 CCL26-201ENST00000005180 526 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC10.32□□□□□ -0.76
MSH5O43196 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC10.32□□□□□ -0.76
MSH5O43196 AL121820.1-201ENST00000556919 461 ntTSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 CRTC3-AS1-201ENST00000558105 502 ntTSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC10.32□□□□□ -0.76
MSH5O43196 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC10.32□□□□□ -0.76
MSH5O43196 RN7SL131P-201ENST00000579043 256 ntBASIC10.32□□□□□ -0.76
MSH5O43196 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC10.32□□□□□ -0.76
MSH5O43196 AC010761.2-202ENST00000582536 391 ntTSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 AC006967.3-201ENST00000594086 1093 ntBASIC10.32□□□□□ -0.76
MSH5O43196 AC020908.2-201ENST00000595134 405 ntTSL 2 BASIC10.32□□□□□ -0.76
MSH5O43196 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 MIR15A-201ENST00000607334 83 ntBASIC10.32□□□□□ -0.76
MSH5O43196 Metazoa_SRP.146-201ENST00000619409 286 ntBASIC10.32□□□□□ -0.76
MSH5O43196 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC10.32□□□□□ -0.76
MSH5O43196 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 AC068700.1-201ENST00000565862 3754 ntBASIC10.32□□□□□ -0.76
MSH5O43196 OR9M1P-202ENST00000641564 3163 ntBASIC10.32□□□□□ -0.76
MSH5O43196 ZNF10-202ENST00000402932 1967 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 GCSAML-211ENST00000623578 3959 ntAPPRIS ALT2 TSL 4 BASIC10.32□□□□□ -0.76
MSH5O43196 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 INO80C-212ENST00000592173 3245 ntTSL 2 BASIC10.31□□□□□ -0.76
MSH5O43196 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
MSH5O43196 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC10.31□□□□□ -0.76
MSH5O43196 AC092821.2-201ENST00000545710 2042 ntBASIC10.31□□□□□ -0.76
MSH5O43196 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC10.31□□□□□ -0.76
MSH5O43196 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC10.31□□□□□ -0.76
MSH5O43196 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
MSH5O43196 MRO-211ENST00000610511 5257 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
MSH5O43196 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
MSH5O43196 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
MSH5O43196 Y_RNA.120-201ENST00000363304 110 ntBASIC10.31□□□□□ -0.76
MSH5O43196 RNU4-7P-201ENST00000364758 141 ntBASIC10.31□□□□□ -0.76
MSH5O43196 Y_RNA.342-201ENST00000365352 113 ntBASIC10.31□□□□□ -0.76
MSH5O43196 Y_RNA.549-201ENST00000384657 102 ntBASIC10.31□□□□□ -0.76
MSH5O43196 RNU6ATAC19P-201ENST00000408096 110 ntBASIC10.31□□□□□ -0.76
MSH5O43196 AC123904.1-201ENST00000441072 368 ntBASIC10.31□□□□□ -0.76
MSH5O43196 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC10.31□□□□□ -0.76
MSH5O43196 RBMY2TP-201ENST00000451162 947 ntBASIC10.31□□□□□ -0.76
MSH5O43196 AC008481.1-201ENST00000463278 396 ntBASIC10.31□□□□□ -0.76
MSH5O43196 RPS29P27-201ENST00000463711 170 ntBASIC10.31□□□□□ -0.76
MSH5O43196 AC022730.2-201ENST00000465359 452 ntBASIC10.31□□□□□ -0.76
MSH5O43196 RPS10P28-201ENST00000480396 498 ntBASIC10.31□□□□□ -0.76
MSH5O43196 AC091868.1-201ENST00000508746 304 ntBASIC10.31□□□□□ -0.76
MSH5O43196 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC10.31□□□□□ -0.76
MSH5O43196 RNU6-158P-201ENST00000517104 100 ntBASIC10.31□□□□□ -0.76
MSH5O43196 FTH1P11-201ENST00000517577 551 ntBASIC10.31□□□□□ -0.76
MSH5O43196 UBL5P4-201ENST00000562584 236 ntBASIC10.31□□□□□ -0.76
MSH5O43196 MIR5192-201ENST00000579892 92 ntBASIC10.31□□□□□ -0.76
MSH5O43196 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC10.31□□□□□ -0.76
MSH5O43196 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC10.31□□□□□ -0.76
MSH5O43196 MIR7162-201ENST00000611134 69 ntBASIC10.31□□□□□ -0.76
MSH5O43196 TTC3P1-201ENST00000399586 6081 ntBASIC10.31□□□□□ -0.76
MSH5O43196 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
MSH5O43196 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
MSH5O43196 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC10.31□□□□□ -0.76
MSH5O43196 L1TD1-201ENST00000498273 3849 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
MSH5O43196 ARMC3-202ENST00000376528 3258 ntTSL 2 BASIC10.31□□□□□ -0.76
MSH5O43196 AC090971.4-201ENST00000560291 1800 ntBASIC10.3□□□□□ -0.76
MSH5O43196 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
MSH5O43196 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
MSH5O43196 USP3-201ENST00000268049 5311 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 HKR1-202ENST00000392153 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
MSH5O43196 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
MSH5O43196 AC105749.1-201ENST00000631338 2008 ntBASIC10.3□□□□□ -0.76
MSH5O43196 UTP23-201ENST00000309822 3699 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
MSH5O43196 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
MSH5O43196 Y_RNA.293-201ENST00000364908 93 ntBASIC10.3□□□□□ -0.76
MSH5O43196 RNA5SP35-201ENST00000391257 129 ntBASIC10.3□□□□□ -0.76
MSH5O43196 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 AL451074.1-202ENST00000453762 989 ntBASIC10.3□□□□□ -0.76
MSH5O43196 RN7SL418P-201ENST00000473031 287 ntBASIC10.3□□□□□ -0.76
MSH5O43196 AL136126.1-201ENST00000473603 402 ntBASIC10.3□□□□□ -0.76
MSH5O43196 AC010631.1-201ENST00000474150 156 ntBASIC10.3□□□□□ -0.76
MSH5O43196 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC10.3□□□□□ -0.76
MSH5O43196 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC10.3□□□□□ -0.76
MSH5O43196 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 AC093484.4-201ENST00000583934 461 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 AC008385.1-201ENST00000604421 355 ntBASIC10.3□□□□□ -0.76
MSH5O43196 AC019257.2-201ENST00000605539 497 ntBASIC10.3□□□□□ -0.76
MSH5O43196 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC10.3□□□□□ -0.76
MSH5O43196 AC130448.2-201ENST00000624082 374 ntBASIC10.3□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 1343.9 ms