Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC092754.2-201ENST00000463506 460 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC108064.1-201ENST00000513791 460 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RN7SKP13-201ENST00000515933 244 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RPL12P22-201ENST00000519073 490 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AL163153.1-201ENST00000554223 283 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC128687.1-201ENST00000605304 619 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AL390240.1-201ENST00000612950 384 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC003001.2-201ENST00000616294 831 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC008033.1-201ENST00000216407 1162 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 OR4A15-201ENST00000314706 1035 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 SNORA57.1-201ENST00000391227 145 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AL121978.1-201ENST00000402778 359 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 SNORA11F-201ENST00000408237 128 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AIMP1P1-201ENST00000418670 937 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AL121882.1-201ENST00000422893 417 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 FAM204CP-201ENST00000424489 642 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 RPP40P1-201ENST00000426762 456 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 IFNNP1-201ENST00000429219 553 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 RPL23AP52-201ENST00000439311 478 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 NECAP1P2-201ENST00000455668 727 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 RN7SL93P-201ENST00000463035 293 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC012181.1-201ENST00000479895 423 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 OR52A4P-202ENST00000481634 799 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC091167.1-201ENST00000492017 396 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC026726.1-201ENST00000512859 601 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MTCO1P35-201ENST00000515270 228 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 RN7SKP21-201ENST00000516503 220 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 SNORD84-203ENST00000584275 78 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MIR3138-201ENST00000585238 82 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC025588.3-201ENST00000604182 274 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC113403.1-201ENST00000604910 193 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 ARF4P1-201ENST00000605447 541 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC005972.3-201ENST00000606304 481 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MIR3653-201ENST00000625572 110 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 AC068724.3-201ENST00000625906 87 ntBASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
ZNF540Q8NDQ6 HSPA8P1-201ENST00000425843 1833 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC006504.1-201ENST00000562493 3666 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 LINC00561-201ENST00000565815 2738 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 HMGN2P8-201ENST00000391458 268 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MTCO3P31-201ENST00000405526 789 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MIR1193-201ENST00000408109 78 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 OR51A3P-201ENST00000413596 924 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 RPL23AP38-201ENST00000423801 469 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AL356276.2-201ENST00000435919 558 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AL500522.2-201ENST00000448562 343 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 SSXP4-201ENST00000451349 245 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 PTGES3P5-201ENST00000455109 434 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC105137.1-201ENST00000484355 562 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms