Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 GVINP1-202ENST00000531871 7271 ntBASIC5.35□□□□□ -1.55
RNF4P78317 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.34□□□□□ -1.55
RNF4P78317 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.34□□□□□ -1.55
RNF4P78317 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
RNF4P78317 AC097714.1-201ENST00000511272 1647 ntBASIC5.34□□□□□ -1.55
RNF4P78317 OR4G1P-203ENST00000641984 1631 ntBASIC5.34□□□□□ -1.55
RNF4P78317 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
RNF4P78317 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
RNF4P78317 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
RNF4P78317 GNG5P2-201ENST00000372054 207 ntBASIC5.34□□□□□ -1.55
RNF4P78317 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
RNF4P78317 RNA5SP122-201ENST00000384457 108 ntBASIC5.34□□□□□ -1.55
RNF4P78317 HMGB1P20-201ENST00000402555 677 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AL136116.1-201ENST00000403591 381 ntBASIC5.34□□□□□ -1.55
RNF4P78317 BTF3L4P3-201ENST00000418879 476 ntBASIC5.34□□□□□ -1.55
RNF4P78317 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.34□□□□□ -1.55
RNF4P78317 AC093155.2-201ENST00000420734 937 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 RPL34P3-201ENST00000421454 338 ntBASIC5.34□□□□□ -1.55
RNF4P78317 MTCO3P46-201ENST00000425787 232 ntBASIC5.34□□□□□ -1.55
RNF4P78317 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.34□□□□□ -1.55
RNF4P78317 AC073410.1-201ENST00000435125 589 ntBASIC5.34□□□□□ -1.55
RNF4P78317 GAPDHP48-201ENST00000436626 961 ntBASIC5.34□□□□□ -1.55
RNF4P78317 RPL36AP39-201ENST00000445859 318 ntBASIC5.34□□□□□ -1.55
RNF4P78317 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.34□□□□□ -1.55
RNF4P78317 RPL7P52-201ENST00000449200 742 ntBASIC5.34□□□□□ -1.55
RNF4P78317 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 FRG2FP-204ENST00000453982 852 ntBASIC5.34□□□□□ -1.55
RNF4P78317 NXT1P1-201ENST00000458481 316 ntBASIC5.34□□□□□ -1.55
RNF4P78317 MTCO2P29-201ENST00000465212 189 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC006512.1-201ENST00000468816 291 ntBASIC5.34□□□□□ -1.55
RNF4P78317 RN7SL570P-201ENST00000484405 292 ntBASIC5.34□□□□□ -1.55
RNF4P78317 RPL23AP41-201ENST00000484754 458 ntBASIC5.34□□□□□ -1.55
RNF4P78317 RPL32P33-201ENST00000487023 394 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC055855.1-201ENST00000489563 579 ntBASIC5.34□□□□□ -1.55
RNF4P78317 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 AC009120.1-201ENST00000493458 473 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 AC105384.2-201ENST00000508433 640 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.34□□□□□ -1.55
RNF4P78317 AC074255.1-201ENST00000511259 501 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 AC087241.2-201ENST00000535801 324 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.34□□□□□ -1.55
RNF4P78317 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 AC005668.1-201ENST00000571142 476 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC060771.1-201ENST00000582031 164 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC068790.3-201ENST00000602988 553 ntBASIC5.34□□□□□ -1.55
RNF4P78317 RPL23AP92-201ENST00000603609 255 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 AL365204.3-201ENST00000612448 685 ntBASIC5.34□□□□□ -1.55
RNF4P78317 RNA5SP439-201ENST00000617595 124 ntBASIC5.34□□□□□ -1.55
RNF4P78317 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.34□□□□□ -1.55
RNF4P78317 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 AL606537.1-201ENST00000607258 2011 ntBASIC5.34□□□□□ -1.55
RNF4P78317 AL078621.3-201ENST00000623707 2042 ntBASIC5.34□□□□□ -1.55
RNF4P78317 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
RNF4P78317 AC092079.1-201ENST00000558620 1985 ntBASIC5.34□□□□□ -1.55
RNF4P78317 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
RNF4P78317 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.34□□□□□ -1.56
RNF4P78317 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
RNF4P78317 MFSD8-239ENST00000641590 2479 ntBASIC5.34□□□□□ -1.56
RNF4P78317 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
RNF4P78317 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
RNF4P78317 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
RNF4P78317 SOCS5P3-201ENST00000425115 1576 ntBASIC5.33□□□□□ -1.56
RNF4P78317 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
RNF4P78317 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
RNF4P78317 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
RNF4P78317 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
RNF4P78317 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.33□□□□□ -1.56
RNF4P78317 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
RNF4P78317 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
RNF4P78317 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
RNF4P78317 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
RNF4P78317 AL159987.1-201ENST00000347911 293 ntBASIC5.33□□□□□ -1.56
RNF4P78317 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
RNF4P78317 RNU6-97P-201ENST00000363387 104 ntBASIC5.33□□□□□ -1.56
RNF4P78317 Y_RNA.184-201ENST00000363884 108 ntBASIC5.33□□□□□ -1.56
RNF4P78317 Y_RNA.255-201ENST00000364581 97 ntBASIC5.33□□□□□ -1.56
RNF4P78317 SDHDP6-201ENST00000414693 480 ntBASIC5.33□□□□□ -1.56
RNF4P78317 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms