Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ATP5HP2-201ENST00000433885 485 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 Z80107.1-201ENST00000436830 412 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC9P31274 RN7SL807P-201ENST00000470923 297 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC093663.1-201ENST00000497190 394 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 HMGB1P1-201ENST00000522557 636 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC9P31274 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC9P31274 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC9P31274 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC9P31274 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC9P31274 MTCO2P2-201ENST00000591258 225 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 VN1R92P-201ENST00000598511 928 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 AP003392.5-201ENST00000607857 415 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC015726.3-201ENST00000624501 418 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC139713.2-210ENST00000641741 992 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC9P31274 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
HOXC9P31274 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC9P31274 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXC9P31274 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC9P31274 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC9P31274 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
HOXC9P31274 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC9P31274 RHOT1P2-201ENST00000366423 333 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 RNU6-932P-201ENST00000391108 106 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 DNAJC19P6-201ENST00000401853 280 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 NDUFB4P4-201ENST00000404822 243 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 USP12PY-201ENST00000427677 1064 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 AC092170.1-201ENST00000440211 356 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 EXOSC3P1-201ENST00000448649 500 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 AL009048.1-201ENST00000450437 298 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 AC243772.1-201ENST00000451620 410 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXC9P31274 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXC9P31274 RN7SKP209-201ENST00000516888 304 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXC9P31274 VN1R87P-201ENST00000596706 487 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXC9P31274 AC073387.2-201ENST00000604797 784 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 AC018816.2-201ENST00000621460 353 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 U6.107-201ENST00000637108 79 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 BTBD10P1-201ENST00000549824 1352 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC9P31274 BDP1P-201ENST00000582658 1990 ntBASIC4.73□□□□□ -1.65
HOXC9P31274 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXC9P31274 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXC9P31274 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 FRG1CP-201ENST00000358464 769 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 RNU6-543P-201ENST00000362576 108 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 MCTS2P-201ENST00000394552 546 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXC9P31274 MIR1303-201ENST00000408625 86 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 BX323014.1-201ENST00000412876 237 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AC009302.1-201ENST00000417147 390 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 MTCO2P17-201ENST00000424336 677 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 MTCO1P53-201ENST00000441633 699 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 OR51B8P-201ENST00000449892 769 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXC9P31274 BTF3P5-201ENST00000457252 467 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.72□□□□□ -1.65
HOXC9P31274 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXC9P31274 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXC9P31274 IGKV2-26-201ENST00000518305 343 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXC9P31274 AC011611.1-201ENST00000552179 197 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 POLR2KP1-201ENST00000553226 168 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AL390334.1-201ENST00000556395 450 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXC9P31274 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.72□□□□□ -1.65
HOXC9P31274 AL157392.4-201ENST00000609756 345 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXC9P31274 MIR7112-201ENST00000616126 65 ntBASIC4.72□□□□□ -1.65
HOXC9P31274 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.72□□□□□ -1.65
HOXC9P31274 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HOXC9P31274 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HOXC9P31274 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HOXC9P31274 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.72□□□□□ -1.65
HOXC9P31274 AL356274.2-201ENST00000624379 3752 ntBASIC4.71□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms