Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC091286.1-201ENST00000431233 461 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 RPS3AP46-201ENST00000448352 682 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 PTGES3P5-201ENST00000455109 434 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC091153.1-201ENST00000466297 402 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AP000563.1-201ENST00000490865 758 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC092185.1-201ENST00000491371 97 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC090071.1-201ENST00000507713 644 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC110768.1-201ENST00000509222 400 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC110792.2-201ENST00000510278 224 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC104619.4-201ENST00000510773 249 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 RNU6-579P-201ENST00000516879 102 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 MIR2276-201ENST00000516886 89 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 RN7SKP234-201ENST00000517173 224 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 GTF2IP22-201ENST00000554443 182 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 OR4T1P-201ENST00000554933 911 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC113194.1-201ENST00000606037 500 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC243756.2-201ENST00000618406 463 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 MIR4278-201ENST00000636094 69 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 AC009093.8-201ENST00000641769 292 ntBASIC2.66□□□□□ -1.98
HLA-DMBP28068 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HLA-DMBP28068 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.66□□□□□ -1.98
HLA-DMBP28068 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.65□□□□□ -1.98
HLA-DMBP28068 SRP72P2-201ENST00000344851 1979 ntBASIC2.65□□□□□ -1.98
HLA-DMBP28068 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.65□□□□□ -1.98
HLA-DMBP28068 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HLA-DMBP28068 AC123912.3-201ENST00000600907 1367 ntBASIC2.65□□□□□ -1.98
HLA-DMBP28068 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC2.65□□□□□ -1.98
HLA-DMBP28068 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HLA-DMBP28068 SNORD9-201ENST00000362566 104 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 RNU6-805P-201ENST00000365643 106 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 SNORA70E-201ENST00000384492 135 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 SNORA48.8-201ENST00000391324 134 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC008065.1-201ENST00000428525 348 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 HSPD1P21-201ENST00000436541 245 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 ARL5AP2-201ENST00000444698 533 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 PDSS1P2-201ENST00000449397 678 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 SUN3-208ENST00000453192 801 ntTSL 5 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 RPS27P29-201ENST00000463110 252 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC078918.1-201ENST00000498515 228 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC023141.12-201ENST00000512399 199 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AP000619.3-201ENST00000535634 1127 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC011602.1-201ENST00000546484 331 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 MEG8-215ENST00000555354 469 ntTSL 3 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 MIR3944-201ENST00000581277 108 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC107294.3-201ENST00000609211 526 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
HLA-DMBP28068 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HLA-DMBP28068 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 AC090337.1-201ENST00000579651 2074 ntBASIC2.65□□□□□ -1.99
HLA-DMBP28068 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HLA-DMBP28068 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HLA-DMBP28068 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
HLA-DMBP28068 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HLA-DMBP28068 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HLA-DMBP28068 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HLA-DMBP28068 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HLA-DMBP28068 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HLA-DMBP28068 AL513302.2-201ENST00000562313 1842 ntBASIC2.64□□□□□ -1.99
HLA-DMBP28068 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HLA-DMBP28068 RNU1-75P-201ENST00000347264 129 ntBASIC2.64□□□□□ -1.99
HLA-DMBP28068 SNORA31-201ENST00000362607 130 ntBASIC2.64□□□□□ -1.99
HLA-DMBP28068 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.64□□□□□ -1.99
HLA-DMBP28068 HSPE1P26-201ENST00000405341 275 ntBASIC2.64□□□□□ -1.99
HLA-DMBP28068 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms