Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC004817.4-201ENST00000602396 3625 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 RPL21P132-201ENST00000331267 462 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL6A1P12109 RNA5SP453-201ENST00000362503 119 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 SNORA2.3-201ENST00000383920 135 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 MIR23B-201ENST00000384832 97 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL6A1P12109 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 AL139098.1-201ENST00000407291 389 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 RPL17P12-201ENST00000413391 526 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 OR8F1P-201ENST00000425243 930 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.49□□□□□ -1.53
COL6A1P12109 RPL21P110-201ENST00000433345 446 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC000111.3-201ENST00000433478 193 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC016831.4-201ENST00000438302 307 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 MTND5P20-201ENST00000448677 143 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC090804.1-201ENST00000448870 490 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 GAPDHP14-201ENST00000450472 937 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 RPS5P7-201ENST00000456664 608 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 HMGB1P36-201ENST00000487709 576 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 RPL7L1P13-201ENST00000511702 739 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 RN7SKP31-201ENST00000516354 278 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 Y_RNA.702-201ENST00000516843 96 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 RN7SKP283-201ENST00000517197 270 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC008802.1-201ENST00000519121 791 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AP001646.1-201ENST00000527936 915 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC007224.1-201ENST00000564410 144 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC023575.1-201ENST00000580510 358 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC024560.3-201ENST00000608482 349 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC007497.1-201ENST00000610421 561 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 AC073348.1-201ENST00000623002 331 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 AC007529.1-201ENST00000418574 2178 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL6A1P12109 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
COL6A1P12109 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC135352.1-201ENST00000506173 1418 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 ADAM24P-201ENST00000398655 2101 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL6A1P12109 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL6A1P12109 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
COL6A1P12109 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 AC074029.4-201ENST00000624796 1859 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 ASNSP1-204ENST00000641977 1664 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 RNU6-1300P-201ENST00000391046 108 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 RNA5SP397-201ENST00000391323 118 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC092647.1-201ENST00000420654 287 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AC093698.1-201ENST00000423843 571 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 RPL30P3-201ENST00000424262 333 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC099670.2-201ENST00000435130 321 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 MTCO3P18-201ENST00000440206 761 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 YWHAQP9-201ENST00000445891 512 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 MTND3P10-201ENST00000450967 341 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.48□□□□□ -1.53
COL6A1P12109 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.48□□□□□ -1.53
COL6A1P12109 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 RPS3AP17-201ENST00000472594 777 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AC090013.1-201ENST00000485147 480 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC114781.4-201ENST00000513707 639 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 HMGB1P23-201ENST00000518743 568 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.48□□□□□ -1.53
COL6A1P12109 AC010632.3-201ENST00000611377 369 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AC018816.2-201ENST00000621460 353 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AP006248.2-201ENST00000623309 592 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AC093648.1-201ENST00000623546 606 ntBASIC5.48□□□□□ -1.53
COL6A1P12109 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.48□□□□□ -1.53
COL6A1P12109 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms