Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC024060.1-201ENST00000607052 494 ntBASIC3.71□□□□□ -1.82
HOXD4P09016 U6.48-201ENST00000618523 106 ntBASIC3.71□□□□□ -1.82
HOXD4P09016 AP006248.2-201ENST00000623309 592 ntBASIC3.71□□□□□ -1.82
HOXD4P09016 AP005264.7-201ENST00000625003 745 ntBASIC3.71□□□□□ -1.82
HOXD4P09016 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD4P09016 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXD4P09016 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXD4P09016 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD4P09016 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD4P09016 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD4P09016 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD4P09016 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
HOXD4P09016 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD4P09016 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD4P09016 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD4P09016 XIAPP3-201ENST00000312918 795 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 SNORA70.4-201ENST00000365509 134 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 DNAJC19P6-201ENST00000401853 280 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD4P09016 RPL7P53-201ENST00000421245 739 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 RPEP2-201ENST00000432149 701 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AL050321.1-201ENST00000432363 400 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 USP9YP24-201ENST00000434374 697 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC009263.1-201ENST00000441193 1239 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 USP9YP17-201ENST00000444617 696 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 ARL5AP2-201ENST00000444698 533 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC244505.3-201ENST00000454598 187 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC092155.2-201ENST00000454675 477 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC110792.1-201ENST00000491826 472 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC134050.1-201ENST00000495088 933 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC017037.1-201ENST00000508460 471 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD4P09016 RNU6-1231P-201ENST00000517185 103 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD4P09016 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD4P09016 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC006518.2-201ENST00000542513 940 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC063950.1-201ENST00000552036 308 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD4P09016 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXD4P09016 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXD4P09016 ATP5F1P7-201ENST00000567330 760 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC022655.2-201ENST00000577280 318 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC115085.1-201ENST00000588924 229 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD4P09016 AC005255.1-201ENST00000593748 216 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AL606490.9-201ENST00000603331 271 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC013468.1-201ENST00000608680 598 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 AC079395.3-201ENST00000615161 484 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD4P09016 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXD4P09016 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD4P09016 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD4P09016 AC022031.1-201ENST00000585985 2593 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
HOXD4P09016 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXD4P09016 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
HOXD4P09016 AL355578.1-201ENST00000607405 1328 ntBASIC3.7□□□□□ -1.82
HOXD4P09016 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD4P09016 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD4P09016 AC116667.1-201ENST00000604855 2072 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD4P09016 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD4P09016 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD4P09016 AC066616.2-201ENST00000559334 1481 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD4P09016 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD4P09016 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD4P09016 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 RNU6-236P-201ENST00000363886 106 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
HOXD4P09016 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD4P09016 RNU11-4P-201ENST00000391149 133 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 TPT1P2-201ENST00000413105 503 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 TCEA1P4-201ENST00000415066 844 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 RPS23P10-201ENST00000416185 486 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 HIGD1AP15-201ENST00000416198 280 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 XKRYP1-201ENST00000423438 492 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 RPL30P3-201ENST00000424262 333 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD4P09016 AC018644.1-201ENST00000429934 551 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 XKRYP2-201ENST00000432915 492 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 PTGES3P1-201ENST00000439531 483 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD4P09016 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD4P09016 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD4P09016 AL050341.1-201ENST00000447743 313 ntBASIC3.69□□□□□ -1.82
HOXD4P09016 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD4P09016 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms