Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AL161781.1-201ENST00000354277 403 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 Y_RNA.48-201ENST00000362710 103 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 Y_RNA.353-201ENST00000365440 108 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AL356421.1-201ENST00000403255 413 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 RNU6-1156P-201ENST00000410365 100 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 RNU4-46P-201ENST00000410818 138 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 RPL31P45-201ENST00000419532 356 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 OR2AQ1P-201ENST00000451972 200 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 MTCO3P2-201ENST00000457365 171 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 RPL17P19-201ENST00000489069 552 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC026801.1-201ENST00000497178 464 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC107958.1-201ENST00000556576 290 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 MIR3941-201ENST00000582572 103 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC067852.5-201ENST00000589299 310 ntBASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
TRIM35Q9UPQ4 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
TRIM35Q9UPQ4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
TRIM35Q9UPQ4 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.09
TRIM35Q9UPQ4 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
TRIM35Q9UPQ4 ZNF101P1-201ENST00000435701 1720 ntBASIC8.21□□□□□ -1.09
TRIM35Q9UPQ4 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 RNU1-49P-201ENST00000363468 159 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 RNA5SP478-201ENST00000364657 115 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 RNU6-804P-201ENST00000384286 107 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 Y_RNA.471-201ENST00000384312 102 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 RPL36AP36-201ENST00000418616 301 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 RPL12P30-201ENST00000488389 499 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AC113367.2-201ENST00000505749 160 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 Y_RNA.662-201ENST00000516028 97 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 RNU6-1332P-201ENST00000516666 104 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AC008083.2-201ENST00000546707 476 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AC004024.1-201ENST00000549244 247 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AC145423.1-201ENST00000605712 336 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 SNORA74.4-201ENST00000607595 199 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AL365222.1-201ENST00000614661 98 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 TCL6_3.1-201ENST00000619064 137 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 MIR4679-1-201ENST00000637619 75 ntBASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC8.21□□□□□ -1.1
TRIM35Q9UPQ4 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RNA5SP350-201ENST00000363298 111 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RNU1-65P-201ENST00000363919 148 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RNU6-842P-201ENST00000384269 107 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RNA5SP431-201ENST00000410312 120 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RPL24P2-201ENST00000421023 475 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RPS15AP27-201ENST00000449183 343 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC011476.1-201ENST00000466725 307 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RPL23AP12-201ENST00000467573 473 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AP002812.1-201ENST00000495378 474 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 SERF1AP1-201ENST00000514575 187 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 RPS27AP18-201ENST00000515536 459 ntBASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC8.2□□□□□ -1.1
TRIM35Q9UPQ4 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms