Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 RNU1-14P-201ENST00000362759 152 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 MIR513A2-201ENST00000385249 127 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 MT-TC-201ENST00000387405 66 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 RN7SKP235-201ENST00000410662 305 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 MTCO2P8-201ENST00000412213 658 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 MTATP6P20-201ENST00000414147 562 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 MTND2P16-201ENST00000419987 799 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 MTCO2P23-201ENST00000425216 680 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 RPS6P12-201ENST00000432491 726 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 TVP23BP2-201ENST00000455082 615 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 RPL23AP81-201ENST00000455252 467 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 DUXAP8-207ENST00000456786 622 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 HMGB3P30-201ENST00000457863 606 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC079804.1-201ENST00000461922 436 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 MTCYBP16-201ENST00000509187 1129 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 KCTD9P2-201ENST00000512203 1013 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 MTCO1P30-201ENST00000515244 580 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 RN7SKP157-201ENST00000516174 282 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 AP003730.1-201ENST00000524605 285 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 OR4A12P-201ENST00000530847 918 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 RN7SL339P-201ENST00000580597 296 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC091946.2-201ENST00000606105 291 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 DUXAP10-204ENST00000612052 616 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 MKKS-204ENST00000639674 192 ntBASIC4.38□□□□□ -1.71
VPS28Q9UK41 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RNVU1-3-201ENST00000364313 161 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RNU2-28P-201ENST00000410457 189 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 OR8G2P-201ENST00000412796 908 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 LUZP4P1-201ENST00000415420 344 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 RPS3AP37-201ENST00000419176 745 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 MRPS36P1-201ENST00000421291 307 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 GTF2IP23-201ENST00000423746 351 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 MOB1AP1-201ENST00000430903 535 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 KCTD10P1-201ENST00000434203 625 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 OR10R1P-201ENST00000441524 1141 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AL136126.1-201ENST00000473603 402 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC108734.3-201ENST00000481241 1165 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RPL5P23-201ENST00000496040 868 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RN7SKP116-201ENST00000516902 319 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS28Q9UK41 RPP40P2-201ENST00000603596 712 ntBASIC4.37□□□□□ -1.71
VPS28Q9UK41 FAM27D1-201ENST00000612308 341 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms