Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 MIR621-201ENST00000384919 96 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL359643.1-201ENST00000404109 423 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL356967.1-201ENST00000406305 431 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RN7SKP151-201ENST00000410230 316 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RN7SKP140-201ENST00000411196 284 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL354751.2-201ENST00000415471 210 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 THEM7P-201ENST00000419556 672 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 NCOR1P3-201ENST00000420479 303 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RAC1P6-201ENST00000423911 575 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RPL7L1P10-201ENST00000427790 463 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 FGF12-202ENST00000430714 603 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 MRPS18BP2-201ENST00000434310 759 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 HMGB3P11-201ENST00000440127 604 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 HMGB3P9-201ENST00000441799 583 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 HCG14-201ENST00000444986 413 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC007383.1-201ENST00000445875 636 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RPL23AP60-201ENST00000450011 454 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 Y_RNA.632-201ENST00000459189 102 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC008481.1-201ENST00000463278 396 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RN7SL168P-201ENST00000463821 279 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC006967.1-201ENST00000467608 589 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC010631.1-201ENST00000474150 156 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RPL12P30-201ENST00000488389 499 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RPL23AP55-201ENST00000498163 452 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC090958.1-201ENST00000511122 351 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RNA5SP441-201ENST00000516809 88 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RNU6-273P-201ENST00000516937 96 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC036111.2-201ENST00000533247 901 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL118558.2-201ENST00000556294 238 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 RN7SL230P-201ENST00000580835 303 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 MIR5583-1-201ENST00000580941 59 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 MIR4424-201ENST00000585257 86 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL390240.1-201ENST00000612950 384 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 SNHG22-203ENST00000617833 660 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 EXOC5P1-201ENST00000510543 1969 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AP000547.3-204ENST00000588548 2523 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL139276.1-201ENST00000311910 1001 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RNU6-1284P-201ENST00000363701 100 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RN7SKP224-201ENST00000364140 325 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 Y_RNA.378-201ENST00000365652 113 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RNU6-701P-201ENST00000384059 107 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 Y_RNA.431-201ENST00000384086 102 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SOD2P1-201ENST00000396543 562 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RNU4-34P-201ENST00000410431 124 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RNU6-712P-201ENST00000410558 100 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL035422.1-201ENST00000414193 397 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SSXP9-201ENST00000417503 292 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 HSPE1P1-201ENST00000421494 318 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms