Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 SNORA9-201ENST00000384215 133 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 MIR30B-201ENST00000384850 88 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 HMGB3P19-201ENST00000403971 560 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 PTGES3P2-201ENST00000407942 482 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 RNA5SP104-201ENST00000410989 118 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 MTND4P22-201ENST00000413116 1169 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 HLA-N-201ENST00000437516 135 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC002542.1-201ENST00000440683 193 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AL353748.1-201ENST00000440753 474 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 NPM1P49-201ENST00000448027 714 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 PPIAP15-201ENST00000479662 484 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 RPS3AP6-201ENST00000484430 795 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 SNORA74D-201ENST00000516404 141 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AP003168.1-201ENST00000530091 307 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 MIR432-201ENST00000606207 94 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AL162574.2-201ENST00000614618 657 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 ZNF285B-201ENST00000561698 1767 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 AC090337.1-201ENST00000579651 2074 ntBASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.01□□□□□ -1.77
HDDC3Q8N4P3 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4□□□□□ -1.77
HDDC3Q8N4P3 RNA5SP72-201ENST00000364442 117 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 GCNT6-201ENST00000379591 934 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 MIR93-201ENST00000385024 80 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 RPL31P2-201ENST00000413849 377 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 TRIM60P5Y-201ENST00000413946 574 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 EI24P1-201ENST00000416584 867 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC246680.2-201ENST00000422106 389 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC091286.1-201ENST00000431233 461 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 GTF2IP12-201ENST00000456547 356 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 RN7SL323P-201ENST00000494712 295 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 OR8I1P-201ENST00000529291 931 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC004217.3-201ENST00000551552 878 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC079171.1-201ENST00000568788 914 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC015726.1-201ENST00000602353 681 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC025946.2-201ENST00000603398 234 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 HSPE1P14-201ENST00000605812 302 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC026741.1-201ENST00000605892 482 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC016542.1-201ENST00000608259 493 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AL031666.3-201ENST00000609320 1006 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AL357559.1-201ENST00000622228 274 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
HDDC3Q8N4P3 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4□□□□□ -1.77
HDDC3Q8N4P3 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4□□□□□ -1.77
HDDC3Q8N4P3 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HDDC3Q8N4P3 EXOC5P1-201ENST00000510543 1969 ntBASIC4□□□□□ -1.77
HDDC3Q8N4P3 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HDDC3Q8N4P3 AC073346.2-201ENST00000624724 2058 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 AP002001.2-201ENST00000529025 1469 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 SAGE4P-201ENST00000442271 3381 ntBASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
HDDC3Q8N4P3 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms