Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPL5P25-201ENST00000441148 775 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC114495.1-201ENST00000441274 436 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC016724.1-201ENST00000453215 421 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC004129.2-201ENST00000457229 287 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC022215.1-201ENST00000481770 362 ntBASIC5.36□□□□□ -1.55
RNF4P78317 RPL23AP72-201ENST00000492447 435 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC093767.1-201ENST00000504523 156 ntBASIC5.36□□□□□ -1.55
RNF4P78317 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC139365.2-201ENST00000517972 253 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC078899.1-201ENST00000521432 1185 ntBASIC5.36□□□□□ -1.55
RNF4P78317 SUB1P1-201ENST00000524415 382 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC5.36□□□□□ -1.55
RNF4P78317 MIR3146-201ENST00000580367 79 ntBASIC5.36□□□□□ -1.55
RNF4P78317 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 AC006115.2-201ENST00000596823 202 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC105429.2-201ENST00000610567 517 ntBASIC5.36□□□□□ -1.55
RNF4P78317 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.36□□□□□ -1.55
RNF4P78317 AC127024.6-201ENST00000621598 424 ntBASIC5.36□□□□□ -1.55
RNF4P78317 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
RNF4P78317 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 OR13C1P-202ENST00000641378 2919 ntBASIC5.35□□□□□ -1.55
RNF4P78317 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 AC006020.1-201ENST00000420179 1854 ntBASIC5.35□□□□□ -1.55
RNF4P78317 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.35□□□□□ -1.55
RNF4P78317 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 AC005294.1-201ENST00000355509 281 ntBASIC5.35□□□□□ -1.55
RNF4P78317 Y_RNA.138-201ENST00000363462 102 ntBASIC5.35□□□□□ -1.55
RNF4P78317 RN7SKP78-201ENST00000364711 318 ntBASIC5.35□□□□□ -1.55
RNF4P78317 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 RPL7P60-201ENST00000397636 735 ntBASIC5.35□□□□□ -1.55
RNF4P78317 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.35□□□□□ -1.55
RNF4P78317 RN7SKP32-201ENST00000410167 303 ntBASIC5.35□□□□□ -1.55
RNF4P78317 RN7SKP235-201ENST00000410662 305 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC5.35□□□□□ -1.55
RNF4P78317 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.35□□□□□ -1.55
RNF4P78317 NDUFA5P4-201ENST00000436704 385 ntBASIC5.35□□□□□ -1.55
RNF4P78317 BX679664.2-201ENST00000439282 283 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.35□□□□□ -1.55
RNF4P78317 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.35□□□□□ -1.55
RNF4P78317 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 AC078785.3-201ENST00000476607 425 ntBASIC5.35□□□□□ -1.55
RNF4P78317 PPIAP19-201ENST00000486414 492 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 AC021146.1-201ENST00000511202 716 ntBASIC5.35□□□□□ -1.55
RNF4P78317 SNORD60.2-201ENST00000516883 86 ntBASIC5.35□□□□□ -1.55
RNF4P78317 RNU6-410P-201ENST00000517006 107 ntBASIC5.35□□□□□ -1.55
RNF4P78317 CYCSP22-201ENST00000517555 339 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC021678.3-201ENST00000517893 476 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 AP003072.2-201ENST00000527756 676 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 SCOCP1-201ENST00000554676 349 ntBASIC5.35□□□□□ -1.55
RNF4P78317 OR4T1P-201ENST00000554933 911 ntBASIC5.35□□□□□ -1.55
RNF4P78317 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 AC079075.1-201ENST00000559543 878 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC096996.1-201ENST00000563813 325 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 AC009852.2-201ENST00000567898 485 ntBASIC5.35□□□□□ -1.55
RNF4P78317 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
RNF4P78317 AL163952.1-202ENST00000569625 600 ntBASIC5.35□□□□□ -1.55
RNF4P78317 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 AC093913.1-201ENST00000614178 329 ntBASIC5.35□□□□□ -1.55
RNF4P78317 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 AC009318.4-201ENST00000620496 486 ntBASIC5.35□□□□□ -1.55
RNF4P78317 AC138965.3-201ENST00000623875 498 ntBASIC5.35□□□□□ -1.55
RNF4P78317 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
RNF4P78317 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
RNF4P78317 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms