Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HNF4AP41235 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.1□□□□□ -1.75
HNF4AP41235 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.1□□□□□ -1.75
HNF4AP41235 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HNF4AP41235 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HNF4AP41235 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
HNF4AP41235 RNU6-600P-201ENST00000362524 99 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 RNU5B-4P-201ENST00000363508 111 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HNF4AP41235 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HNF4AP41235 MIR1183-201ENST00000408856 89 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 RNU4-25P-201ENST00000410569 230 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 Y_RNA.625-201ENST00000411256 107 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 TAF13P2-201ENST00000416876 286 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 PTP4A1P7-201ENST00000423476 514 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.09□□□□□ -1.75
HNF4AP41235 IFNNP1-201ENST00000429219 553 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC016712.1-201ENST00000431088 378 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MTCYBP15-201ENST00000433123 1127 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 RPS7P2-201ENST00000435134 607 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.09□□□□□ -1.75
HNF4AP41235 AL592437.1-201ENST00000443781 492 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 SEPT14P24-201ENST00000447236 180 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 RPL7P59-201ENST00000447700 943 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL162151.2-201ENST00000448875 158 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 AC009220.1-201ENST00000451614 275 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 RN7SL585P-201ENST00000470538 280 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 RPL35P6-201ENST00000490024 372 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC068305.1-201ENST00000497406 726 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC118282.2-201ENST00000508739 374 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 HPRT1P1-201ENST00000509498 657 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 RNA5SP519-201ENST00000516480 119 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 AC010376.1-201ENST00000522101 334 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AP004371.1-201ENST00000525240 214 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.09□□□□□ -1.75
HNF4AP41235 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.09□□□□□ -1.75
HNF4AP41235 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.09□□□□□ -1.75
HNF4AP41235 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 ZNF192P1-203ENST00000565888 810 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.09□□□□□ -1.75
HNF4AP41235 AGGF1P5-201ENST00000567900 919 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MTATP6P24-201ENST00000576835 677 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MIR4509-3-201ENST00000578671 94 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MIR4644-201ENST00000579929 84 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MIR4509-2-201ENST00000583920 94 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 MTCO2P2-201ENST00000591258 225 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 AC002487.1-201ENST00000604565 994 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL354760.1-201ENST00000608357 643 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC114781.5-201ENST00000615297 108 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MIR4509-1-201ENST00000618224 94 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 MIR6758-201ENST00000620653 63 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AL356863.1-201ENST00000623378 1080 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.09□□□□□ -1.75
HNF4AP41235 AL121594.5-201ENST00000631724 573 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC008013.2-202ENST00000637965 364 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
HNF4AP41235 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HNF4AP41235 Z82217.1-201ENST00000625157 8149 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 AC066616.2-201ENST00000559334 1481 ntBASIC4.09□□□□□ -1.75
HNF4AP41235 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
HNF4AP41235 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HNF4AP41235 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
HNF4AP41235 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HNF4AP41235 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HNF4AP41235 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HNF4AP41235 FAM3C2-201ENST00000312214 681 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.08□□□□□ -1.76
HNF4AP41235 RNA5SP388-201ENST00000362584 119 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 RNU1-14P-201ENST00000362759 152 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 RNU6-353P-201ENST00000364266 108 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 RNU1-132P-201ENST00000364300 164 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 Y_RNA.493-201ENST00000384422 102 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HNF4AP41235 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HNF4AP41235 RN7SKP235-201ENST00000410662 305 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 FAR2P2-201ENST00000413041 594 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.08□□□□□ -1.76
HNF4AP41235 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.08□□□□□ -1.76
HNF4AP41235 RPL7P28-201ENST00000437739 740 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 CYCSP43-201ENST00000438233 310 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 TPTE2P3-201ENST00000441562 1189 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 ELOCP13-201ENST00000443934 329 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 AC239367.2-201ENST00000447309 705 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 EXOSC3P1-201ENST00000448649 500 ntBASIC4.08□□□□□ -1.76
HNF4AP41235 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms