Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.83□□□□□ -1.8
SCN4AP35499 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.83□□□□□ -1.8
SCN4AP35499 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
SCN4AP35499 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SCN4AP35499 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
SCN4AP35499 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 OR56A5-201ENST00000340110 738 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 RNU1-87P-201ENST00000363727 170 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.82□□□□□ -1.8
SCN4AP35499 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.82□□□□□ -1.8
SCN4AP35499 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.82□□□□□ -1.8
SCN4AP35499 SLC31A1P1-201ENST00000451221 567 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 AC087312.1-201ENST00000471411 480 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 OR5AP1P-201ENST00000529730 940 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.82□□□□□ -1.8
SCN4AP35499 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.82□□□□□ -1.8
SCN4AP35499 BDH2P1-201ENST00000602288 736 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 MIR622-201ENST00000638396 96 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 AC006504.1-201ENST00000562493 3666 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SCN4AP35499 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 AC017071.1-201ENST00000564407 2204 ntBASIC3.82□□□□□ -1.8
SCN4AP35499 AC012065.2-201ENST00000421295 375 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.81□□□□□ -1.8
SCN4AP35499 RPS3AP50-201ENST00000487064 803 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 PCBP2P3-201ENST00000509726 843 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 RNU6-237P-201ENST00000515985 71 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 AC099489.2-201ENST00000574976 260 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AC087468.1-201ENST00000604365 630 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 AC068647.1-201ENST00000489539 2265 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SCN4AP35499 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.81□□□□□ -1.8
SCN4AP35499 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 AL121578.1-201ENST00000428051 892 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 AC126389.1-201ENST00000477436 290 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SCN4AP35499 CYP2C60P-201ENST00000566088 139 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SCN4AP35499 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SCN4AP35499 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 uc_338.25-201ENST00000613756 156 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 AC000403.1-201ENST00000613696 3585 ntBASIC3.81□□□□□ -1.8
SCN4AP35499 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SCN4AP35499 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SCN4AP35499 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.81□□□□□ -1.8
SCN4AP35499 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.8□□□□□ -1.8
SCN4AP35499 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.8□□□□□ -1.8
SCN4AP35499 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SCN4AP35499 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 XGY1-201ENST00000381172 446 ntBASIC3.8□□□□□ -1.8
SCN4AP35499 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.8□□□□□ -1.8
SCN4AP35499 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.8□□□□□ -1.8
SCN4AP35499 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC3.8□□□□□ -1.8
SCN4AP35499 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.8□□□□□ -1.8
SCN4AP35499 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 AC009812.2-201ENST00000517657 457 ntBASIC3.8□□□□□ -1.8
SCN4AP35499 COX6CP8-201ENST00000522620 226 ntBASIC3.8□□□□□ -1.8
SCN4AP35499 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.8□□□□□ -1.8
SCN4AP35499 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SCN4AP35499 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.8□□□□□ -1.8
SCN4AP35499 AL132656.3-201ENST00000606384 1595 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.79□□□□□ -1.8
SCN4AP35499 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SCN4AP35499 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SCN4AP35499 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SCN4AP35499 SNORD67-201ENST00000390833 111 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.79□□□□□ -1.8
SCN4AP35499 Z93242.1-201ENST00000427102 353 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.79□□□□□ -1.8
SCN4AP35499 EXTL2P1-201ENST00000446218 416 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 HMGB3P14-201ENST00000494195 599 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
SCN4AP35499 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SCN4AP35499 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.79□□□□□ -1.8
SCN4AP35499 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SCN4AP35499 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.79□□□□□ -1.8
SCN4AP35499 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.79□□□□□ -1.8
SCN4AP35499 MIR4435-1-201ENST00000582552 80 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.79□□□□□ -1.8
SCN4AP35499 AC112503.1-201ENST00000608436 391 ntBASIC3.79□□□□□ -1.8
SCN4AP35499 MTCO1P8-201ENST00000416914 1523 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms