Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXC9P31274 Z82195.1-201ENST00000604558 398 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 AC115621.1-201ENST00000604653 858 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 AC093673.2-201ENST00000609674 331 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 DUXAP10-204ENST00000612052 616 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 MIR4509-1-201ENST00000618224 94 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC9P31274 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC9P31274 ZNF849P-201ENST00000594711 1566 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 AC093311.1-201ENST00000506586 2021 ntBASIC4.77□□□□□ -1.65
HOXC9P31274 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
HOXC9P31274 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
HOXC9P31274 SAGE2P-201ENST00000420011 2126 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC9P31274 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC9P31274 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC9P31274 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HOXC9P31274 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC9P31274 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC9P31274 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC9P31274 RNU5E-10P-201ENST00000363506 118 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 RNU6-225P-201ENST00000384613 103 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 MTHFD2P2-201ENST00000407725 247 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 VN1R51P-201ENST00000411675 945 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 MTCO2P8-201ENST00000412213 658 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC9P31274 AC246680.2-201ENST00000422106 389 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 RPL7P29-201ENST00000437151 728 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 CASP3P1-201ENST00000446037 609 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 AC099563.1-201ENST00000456086 418 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXC9P31274 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXC9P31274 RPL32P34-201ENST00000486380 400 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 AC096571.1-202ENST00000506634 735 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXC9P31274 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXC9P31274 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 uc_338.9-201ENST00000617424 182 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXC9P31274 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC9P31274 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXC9P31274 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXC9P31274 AC009229.4-201ENST00000623854 1947 ntBASIC4.76□□□□□ -1.65
HOXC9P31274 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC9P31274 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC9P31274 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXC9P31274 RNU6-98P-201ENST00000384173 107 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 Z92545.1-201ENST00000411782 234 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXC9P31274 AC092447.2-201ENST00000435487 669 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AL589765.3-201ENST00000446084 462 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXC9P31274 AC108729.1-201ENST00000487812 947 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 TRAV31-201ENST00000502780 342 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC9P31274 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXC9P31274 AC091163.3-201ENST00000518269 1144 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC9P31274 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXC9P31274 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC9P31274 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.75□□□□□ -1.65
HOXC9P31274 ZNF971P-201ENST00000562068 1249 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXC9P31274 ATP5F1P7-201ENST00000567330 760 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.75□□□□□ -1.65
HOXC9P31274 ZNF92P3-201ENST00000596594 954 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AP002906.1-201ENST00000603405 233 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 YPEL5P2-201ENST00000605553 359 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC055764.2-201ENST00000610089 670 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 FRG1HP-204ENST00000617940 757 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC091905.1-201ENST00000624400 311 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXC9P31274 AC007656.2-201ENST00000624902 4547 ntBASIC4.75□□□□□ -1.65
HOXC9P31274 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXC9P31274 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC9P31274 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXC9P31274 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXC9P31274 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXC9P31274 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXC9P31274 SNORD65C-201ENST00000390962 71 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXC9P31274 RN7SKP53-201ENST00000411337 315 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC092638.1-201ENST00000411966 1275 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXC9P31274 AC048351.1-201ENST00000420064 602 ntBASIC4.74□□□□□ -1.65
HOXC9P31274 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms