Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
MSX1P28360 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 AC005332.9-201ENST00000620266 2921 ntBASIC5.95□□□□□ -1.46
MSX1P28360 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 NXPH1-205ENST00000602349 1953 ntBASIC5.95□□□□□ -1.46
MSX1P28360 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 RN7SKP237-201ENST00000364663 301 ntBASIC5.95□□□□□ -1.46
MSX1P28360 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 Y_RNA.594-201ENST00000410373 140 ntBASIC5.95□□□□□ -1.46
MSX1P28360 HMGN1P24-201ENST00000412282 298 ntBASIC5.95□□□□□ -1.46
MSX1P28360 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 AC234781.4-201ENST00000419384 244 ntBASIC5.95□□□□□ -1.46
MSX1P28360 RPL7P46-201ENST00000425129 740 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AC092651.1-201ENST00000426110 312 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 AC236972.1-201ENST00000433225 199 ntBASIC5.95□□□□□ -1.46
MSX1P28360 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 RPS26P56-201ENST00000444468 240 ntBASIC5.95□□□□□ -1.46
MSX1P28360 OSTCP8-201ENST00000445117 448 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 HMGN1P16-201ENST00000508308 283 ntBASIC5.95□□□□□ -1.46
MSX1P28360 Y_RNA.680-201ENST00000516441 93 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.95□□□□□ -1.46
MSX1P28360 AP000889.1-201ENST00000530968 660 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AC084121.1-201ENST00000533882 835 ntBASIC5.95□□□□□ -1.46
MSX1P28360 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.95□□□□□ -1.46
MSX1P28360 AC023968.1-201ENST00000560719 475 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 AL021879.1-201ENST00000611756 288 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AC243654.2-201ENST00000612843 443 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AL352984.2-202ENST00000613699 155 ntBASIC5.95□□□□□ -1.46
MSX1P28360 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 AL132640.3-201ENST00000630473 177 ntBASIC5.95□□□□□ -1.46
MSX1P28360 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
MSX1P28360 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 MTND5P7-201ENST00000413558 1798 ntBASIC5.95□□□□□ -1.46
MSX1P28360 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC5.95□□□□□ -1.46
MSX1P28360 AC011455.2-201ENST00000599320 3336 ntBASIC5.95□□□□□ -1.46
MSX1P28360 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 AC073365.1-203ENST00000641055 1992 ntBASIC5.95□□□□□ -1.46
MSX1P28360 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
MSX1P28360 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX1P28360 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX1P28360 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX1P28360 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 Y_RNA.576-201ENST00000384781 102 ntBASIC5.94□□□□□ -1.46
MSX1P28360 RNU6-33P-201ENST00000384793 107 ntBASIC5.94□□□□□ -1.46
MSX1P28360 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
MSX1P28360 RNA5SP431-201ENST00000410312 120 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 RPL6P29-201ENST00000414863 865 ntBASIC5.94□□□□□ -1.46
MSX1P28360 UBE2V1P14-201ENST00000415815 558 ntBASIC5.94□□□□□ -1.46
MSX1P28360 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX1P28360 MRPS21P5-201ENST00000417885 231 ntBASIC5.94□□□□□ -1.46
MSX1P28360 PGBD4P6-201ENST00000421501 610 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC083862.1-201ENST00000427378 1242 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 DYNLT3P2-201ENST00000442517 295 ntBASIC5.94□□□□□ -1.46
MSX1P28360 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX1P28360 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX1P28360 RNU6-1132P-201ENST00000459214 107 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC018638.3-201ENST00000461273 132 ntBASIC5.94□□□□□ -1.46
MSX1P28360 RPL23AP64-201ENST00000469465 435 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC103987.1-201ENST00000473394 348 ntBASIC5.94□□□□□ -1.46
MSX1P28360 RN7SL362P-201ENST00000494228 267 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC104109.1-201ENST00000498563 436 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC112484.3-201ENST00000505910 329 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC016559.2-201ENST00000510759 359 ntBASIC5.94□□□□□ -1.46
MSX1P28360 AC093853.1-201ENST00000515689 483 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms