Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-189P-201ENST00000516120 101 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 RNA5SP384-201ENST00000516615 116 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC5.64□□□□□ -1.51
COL8A1P27658 SAA3P-201ENST00000533267 365 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC007956.1-201ENST00000555623 542 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 AC023827.2-201ENST00000566880 1061 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 MIR3135A-201ENST00000578460 77 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC020765.1-201ENST00000604296 328 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 RAC1P9-201ENST00000604990 392 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 RNA5SP440-201ENST00000612665 119 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 MIR6085-201ENST00000618314 110 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.64□□□□□ -1.51
COL8A1P27658 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 AL122126.1-201ENST00000546905 1318 ntBASIC5.64□□□□□ -1.51
COL8A1P27658 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC5.64□□□□□ -1.51
COL8A1P27658 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC5.64□□□□□ -1.51
COL8A1P27658 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC5.64□□□□□ -1.51
COL8A1P27658 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL8A1P27658 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC5.63□□□□□ -1.51
COL8A1P27658 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 AC007938.1-201ENST00000562524 2902 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL8A1P27658 RN7SKP162-201ENST00000363605 345 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RNA5SP394-201ENST00000364216 119 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RNU1-24P-201ENST00000364285 165 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 RNU6-398P-201ENST00000384143 109 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 SNORA41-201ENST00000384675 132 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 AL031679.1-201ENST00000400616 525 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RNA5SP36-201ENST00000410197 133 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 U3.43-201ENST00000410734 213 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AL139156.1-201ENST00000412785 841 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC008753.1-201ENST00000423096 284 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RPL12P34-201ENST00000424532 479 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RPL36AP15-201ENST00000444514 266 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.63□□□□□ -1.51
COL8A1P27658 CFL1P4-201ENST00000451536 498 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.63□□□□□ -1.51
COL8A1P27658 Y_RNA.644-201ENST00000459006 113 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RNU7-120P-201ENST00000459334 63 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC079804.1-201ENST00000461922 436 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 Y_RNA.674-201ENST00000516362 113 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 Y_RNA.683-201ENST00000516508 93 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC109329.1-201ENST00000518744 317 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 AC008083.2-201ENST00000546707 476 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.63□□□□□ -1.51
COL8A1P27658 TPRX1P1-201ENST00000557620 319 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.63□□□□□ -1.51
COL8A1P27658 SULT1C2P1-202ENST00000562418 459 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC010547.6-201ENST00000571789 193 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.63□□□□□ -1.51
COL8A1P27658 RN7SL208P-201ENST00000577964 296 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
COL8A1P27658 AC011477.5-201ENST00000586571 259 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 AC073046.2-201ENST00000604756 527 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC090525.3-201ENST00000605601 189 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 SNORA74.4-201ENST00000607595 199 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 AL138960.1-201ENST00000613838 513 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AP001486.3-201ENST00000615334 372 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AC244100.1-202ENST00000621554 382 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 MIR4272-201ENST00000635924 64 ntBASIC5.63□□□□□ -1.51
COL8A1P27658 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL8A1P27658 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.63□□□□□ -1.51
COL8A1P27658 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC5.63□□□□□ -1.51
COL8A1P27658 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL8A1P27658 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL8A1P27658 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms