Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL359757.1-201ENST00000623176 255 ntBASIC5.56□□□□□ -1.52
HMGB1P09429 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.56□□□□□ -1.52
HMGB1P09429 CRYM-AS1-204ENST00000637983 556 ntBASIC5.56□□□□□ -1.52
HMGB1P09429 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.56□□□□□ -1.52
HMGB1P09429 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.56□□□□□ -1.52
HMGB1P09429 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HMGB1P09429 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.56□□□□□ -1.52
HMGB1P09429 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HMGB1P09429 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HMGB1P09429 AL356473.1-201ENST00000406203 1408 ntBASIC5.56□□□□□ -1.52
HMGB1P09429 OR4G11P-202ENST00000642116 1414 ntBASIC5.56□□□□□ -1.52
HMGB1P09429 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AP001148.1-201ENST00000624124 2359 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 RN7SKP115-201ENST00000363177 317 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 Y_RNA.311-201ENST00000365068 96 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.55□□□□□ -1.52
HMGB1P09429 CHIAP3-201ENST00000423668 1133 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AC007742.1-201ENST00000425789 329 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 ELOCP26-201ENST00000436067 329 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 UBE2V1P3-201ENST00000439651 417 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AL645638.1-201ENST00000440519 361 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 RPL21P134-201ENST00000453468 483 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AC063943.1-201ENST00000465434 453 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 PPIAP15-201ENST00000479662 484 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 RN7SKP13-201ENST00000515933 244 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 AP001922.4-201ENST00000526967 290 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC5.55□□□□□ -1.52
HMGB1P09429 CR383656.7-201ENST00000548164 174 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.55□□□□□ -1.52
HMGB1P09429 SETP7-201ENST00000552169 453 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.55□□□□□ -1.52
HMGB1P09429 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.55□□□□□ -1.52
HMGB1P09429 AC009101.1-201ENST00000568135 242 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 MTND1P8-201ENST00000571424 950 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 MIR4737-201ENST00000583979 81 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 AC009974.1-201ENST00000608881 455 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.55□□□□□ -1.52
HMGB1P09429 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HMGB1P09429 MIR6719-201ENST00000622428 87 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HMGB1P09429 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.55□□□□□ -1.52
HMGB1P09429 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC5.55□□□□□ -1.52
HMGB1P09429 AC097714.1-201ENST00000511272 1647 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 NXPH1-205ENST00000602349 1953 ntBASIC5.55□□□□□ -1.52
HMGB1P09429 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HMGB1P09429 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.54□□□□□ -1.52
HMGB1P09429 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HMGB1P09429 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
HMGB1P09429 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HMGB1P09429 MIR1183-201ENST00000408856 89 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 RNU6-584P-201ENST00000410350 95 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 RN7SKP278-201ENST00000410504 342 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 RSU1P3-201ENST00000412878 835 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 OR1AA1P-201ENST00000419597 916 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 RPL7P30-201ENST00000420888 709 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AC016831.4-201ENST00000438302 307 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 SNORA71B-202ENST00000439232 272 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HMGB1P09429 RPL26P28-201ENST00000451325 435 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC5.54□□□□□ -1.52
HMGB1P09429 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC079395.1-201ENST00000510981 262 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC108064.1-201ENST00000513791 460 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC016180.1-201ENST00000567945 403 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AC015912.2-201ENST00000571053 181 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 RN7SL652P-201ENST00000577769 300 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC234771.5-201ENST00000600161 514 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AL031320.1-201ENST00000604177 357 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.54□□□□□ -1.52
HMGB1P09429 SNORD91B-202ENST00000608459 222 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC5.54□□□□□ -1.52
HMGB1P09429 AC116096.1-201ENST00000566804 2314 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 AL079343.1-201ENST00000572358 1771 ntBASIC5.54□□□□□ -1.52
HMGB1P09429 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms