Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 DDX18P3-201ENST00000404856 2007 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 SNORA48.2-201ENST00000390926 124 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 FO393414.1-201ENST00000428697 1184 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 YWHAEP5-201ENST00000431545 765 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 DNAJC19P8-201ENST00000452887 259 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 GNRHR2P1-201ENST00000555315 631 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 AC012603.1-201ENST00000606424 528 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 MIR8058-201ENST00000615737 89 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 AL591424.2-201ENST00000617023 128 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 ABBA01000935.2-201ENST00000637477 838 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 OR6C71P-202ENST00000641886 1107 ntBASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SHROOM4Q9ULL8 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 HNRNPDP2-201ENST00000406475 478 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 RNA5SP120-201ENST00000410900 112 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL391219.1-201ENST00000422570 483 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL645931.1-201ENST00000439737 410 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL592437.1-201ENST00000443781 492 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 RPL21P11-201ENST00000461458 483 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC008494.2-201ENST00000514544 370 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC104115.2-201ENST00000523026 687 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AP003066.2-201ENST00000529375 555 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL442163.2-201ENST00000553912 710 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 OR4U1P-201ENST00000554958 912 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC068446.3-201ENST00000555285 382 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 RN7SL622P-201ENST00000585292 275 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC008507.2-201ENST00000588402 1176 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AP000255.1-201ENST00000610276 676 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL512646.1-201ENST00000269395 1077 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL355143.1-201ENST00000407101 841 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL450263.2-201ENST00000439400 589 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 OR51B8P-201ENST00000449892 769 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AP000563.1-201ENST00000490865 758 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 PRELID3BP4-201ENST00000515476 571 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 OR4A12P-201ENST00000530847 918 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 VN1R88P-201ENST00000596787 292 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AL137849.1-201ENST00000604767 169 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 AC092608.3-201ENST00000625017 386 ntBASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHROOM4Q9ULL8 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 MRPL35P4-201ENST00000453682 566 ntBASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 RPL7L1P13-201ENST00000511702 739 ntBASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 MTND5P21-201ENST00000531961 522 ntBASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 MTND6P33-201ENST00000571794 183 ntBASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 BNIP3P4-201ENST00000604946 565 ntBASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHROOM4Q9ULL8 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHROOM4Q9ULL8 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHROOM4Q9ULL8 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHROOM4Q9ULL8 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
SHROOM4Q9ULL8 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SHROOM4Q9ULL8 RNU6-1257P-201ENST00000384625 110 ntBASIC7.15□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms