Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-890P-201ENST00000384121 107 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 RNU6-432P-201ENST00000384196 109 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 Y_RNA.574-201ENST00000384766 95 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 RNU6-516P-201ENST00000411381 104 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC114491.1-201ENST00000416095 246 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 Z93019.1-201ENST00000416450 973 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC005094.1-201ENST00000440420 368 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 RPS17P13-201ENST00000448974 407 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 PPIAP3-201ENST00000450588 505 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 RPL23AP55-201ENST00000498163 452 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 HMGB1P21-201ENST00000502313 581 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC116337.1-201ENST00000509680 687 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 GAPDHP62-201ENST00000515313 990 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 Y_RNA.661-201ENST00000516003 99 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 Y_RNA.708-201ENST00000516950 96 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 RNA5SP400-201ENST00000517155 111 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 MIR3941-201ENST00000582572 103 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 MIR4701-201ENST00000583094 63 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC100812.1-201ENST00000607622 580 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AL021918.2-201ENST00000613415 194 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AL512624.1-201ENST00000613638 469 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 FAM27E2-201ENST00000619668 403 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 ZNF33CP-201ENST00000432492 2030 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 MAPK10-344ENST00000641718 3746 ntBASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIMD1Q9UGP4 LCOR-201ENST00000286067 4542 ntBASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 AL591848.4-201ENST00000567832 3472 ntBASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
LIMD1Q9UGP4 MTND5P30-201ENST00000452896 1731 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 Y_RNA.455-201ENST00000384230 98 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 MIR130B-202ENST00000385018 82 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 RNA5SP219-201ENST00000390940 113 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 RNU6-550P-201ENST00000391057 101 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 RNU4-6P-201ENST00000410804 122 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 RPL31P2-201ENST00000413849 377 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 GJA6P-201ENST00000415117 1042 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AL139095.3-201ENST00000419672 1203 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC010733.1-201ENST00000451515 401 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC243772.1-201ENST00000451620 410 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC007998.1-201ENST00000474156 672 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 HMGB1P30-201ENST00000492455 606 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC023818.1-201ENST00000498379 384 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC108078.2-201ENST00000510750 236 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC051619.2-201ENST00000559063 397 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC124068.1-201ENST00000563131 678 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC006157.1-201ENST00000611750 366 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AL355365.1-201ENST00000616480 294 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 AC007485.1-201ENST00000616755 206 ntBASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.71□□□□□ -1.34
LIMD1Q9UGP4 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms