Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ATP5F1P1-201ENST00000433775 569 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL359265.2-201ENST00000434367 631 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL353748.1-201ENST00000440753 474 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL451050.1-201ENST00000450126 415 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 VN1R40P-201ENST00000455196 941 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 RPL23AP2-201ENST00000471227 466 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC010683.1-201ENST00000473673 378 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 RN7SL860P-201ENST00000473738 223 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC013356.1-201ENST00000489027 564 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 MTCYBP16-201ENST00000509187 1129 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC110792.2-201ENST00000510278 224 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC093840.1-201ENST00000511599 336 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 IGLVIV-65-201ENST00000517313 360 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC124068.1-201ENST00000563131 678 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL132657.2-201ENST00000564417 358 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 MIR4284-201ENST00000578924 81 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 RPL12P25-202ENST00000598100 674 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 BNIP3P26-201ENST00000600827 554 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 ELOCP35-201ENST00000604289 336 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC064801.1-201ENST00000612025 407 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AL359535.1-201ENST00000612100 1087 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 AP005019.3-201ENST00000620418 560 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 MIR6758-201ENST00000620653 63 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AP002782.1-201ENST00000623107 614 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC098679.5-201ENST00000624394 571 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 AC019226.2-201ENST00000625973 424 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 MIR6715B-201ENST00000637172 77 ntBASIC3.71□□□□□ -1.82
NKX3-1Q99801 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.71□□□□□ -1.82
NKX3-1Q99801 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX3-1Q99801 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 DHX40P1-201ENST00000588725 1412 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 Z82217.1-201ENST00000625157 8149 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 MIR331-201ENST00000362302 94 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 RNU6-492P-201ENST00000363035 104 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 SNORD74.4-201ENST00000364129 80 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 SNORD113.2-201ENST00000364166 89 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 RNA5SP397-201ENST00000391323 118 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 TMSB10P2-201ENST00000416049 131 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC008280.1-201ENST00000418851 412 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 RPL30P3-201ENST00000424262 333 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AL138785.1-201ENST00000425821 331 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 NANOGP6-201ENST00000429190 847 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 IFNNP1-201ENST00000429219 553 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 RPL31P54-201ENST00000429803 370 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC023347.2-201ENST00000433994 462 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 RPL23AP89-201ENST00000439324 255 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 TPT1P12-201ENST00000448968 492 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 DHFRP3-201ENST00000455595 559 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 snoU13.7-201ENST00000459220 104 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC021146.8-201ENST00000507455 733 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC034244.1-201ENST00000507687 207 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC116353.3-201ENST00000511215 249 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 RNU6-1225P-201ENST00000516336 65 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 SNORA48.10-201ENST00000516965 160 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 IGLVIV-53-201ENST00000520107 367 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 C1GALT1P3-201ENST00000522049 819 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms