Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 PTP4A1P5-201ENST00000420305 455 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 YWHAZP8-201ENST00000436935 731 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL356535.1-201ENST00000440335 398 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 PPIAP3-201ENST00000450588 505 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 BX276092.4-201ENST00000452056 248 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 BX248409.1-201ENST00000455497 255 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC108941.1-201ENST00000502853 530 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC121161.1-201ENST00000510606 652 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 IGKV2-23-201ENST00000518729 323 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 AF279873.1-201ENST00000523393 313 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC090877.1-201ENST00000561418 344 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC106785.1-201ENST00000565935 262 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 MIR3186-201ENST00000577404 85 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC008687.2-201ENST00000597865 520 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC005776.1-201ENST00000603164 290 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 BNIP3P4-201ENST00000604946 565 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AC012531.5-201ENST00000611375 151 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL109659.3-201ENST00000624985 950 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 Y_RNA.110-201ENST00000363220 99 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 RNU1-64P-201ENST00000365443 163 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 MIR30B-201ENST00000384850 88 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 RNU6-272P-201ENST00000411028 104 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 BX664727.1-201ENST00000416024 466 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC084198.1-201ENST00000477747 402 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AL049830.2-201ENST00000480072 201 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 SCARNA14-201ENST00000516903 136 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 RNU6-1231P-201ENST00000517185 103 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC087499.8-201ENST00000578406 226 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 VN1R88P-201ENST00000596787 292 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC092474.3-201ENST00000603022 568 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC098483.2-201ENST00000603158 454 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AL137849.1-201ENST00000604767 169 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC112503.2-201ENST00000609005 552 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 MIR486-1-201ENST00000612171 68 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 AC005344.1-201ENST00000613391 459 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 AL161912.2-201ENST00000565707 3007 ntBASIC3.79□□□□□ -1.8
VPS35Q96QK1 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
VPS35Q96QK1 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS35Q96QK1 MTCO1P4-201ENST00000520516 1409 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC107081.3-201ENST00000612715 2034 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 MTCO1P6-201ENST00000481192 1384 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS35Q96QK1 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS35Q96QK1 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS35Q96QK1 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 Y_RNA.126-201ENST00000363382 111 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 MIR525-201ENST00000384978 85 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 HLFP1-201ENST00000402375 499 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS35Q96QK1 AC019070.1-201ENST00000415008 1024 ntBASIC3.78□□□□□ -1.8
VPS35Q96QK1 AL591419.1-201ENST00000427423 339 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms