Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
H3F3AP84243 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
H3F3AP84243 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
H3F3AP84243 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
H3F3AP84243 AC032011.1-201ENST00000611703 1549 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
H3F3AP84243 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
H3F3AP84243 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
H3F3AP84243 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
H3F3AP84243 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
H3F3AP84243 AC234772.1-201ENST00000377927 937 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 MIR218-2-201ENST00000385006 110 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 SNORD17-201ENST00000390930 237 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AC069218.2-201ENST00000411665 344 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.09□□□□□ -1.91
H3F3AP84243 RPS29P4-201ENST00000414733 161 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.09□□□□□ -1.91
H3F3AP84243 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.09□□□□□ -1.91
H3F3AP84243 RPL37P1-201ENST00000432310 284 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 HMGN2P31-201ENST00000432430 273 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AL035458.1-201ENST00000433096 585 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 RPL21P110-201ENST00000433345 446 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 CBX1P4-201ENST00000439415 457 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
H3F3AP84243 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.09□□□□□ -1.91
H3F3AP84243 RPL37P6-202ENST00000464216 403 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.09□□□□□ -1.91
H3F3AP84243 AP000563.1-201ENST00000490865 758 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
H3F3AP84243 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.09□□□□□ -1.91
H3F3AP84243 AC067852.3-201ENST00000589177 561 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.09□□□□□ -1.91
H3F3AP84243 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.09□□□□□ -1.91
H3F3AP84243 AC006254.3-201ENST00000603353 884 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AC069304.3-201ENST00000603938 1084 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AC092354.2-201ENST00000607786 514 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 AC048347.1-201ENST00000624621 427 ntBASIC3.09□□□□□ -1.91
H3F3AP84243 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
H3F3AP84243 AC058791.1-201ENST00000608412 3198 ntBASIC3.09□□□□□ -1.92
H3F3AP84243 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
H3F3AP84243 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
H3F3AP84243 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.09□□□□□ -1.92
H3F3AP84243 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.92
H3F3AP84243 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.09□□□□□ -1.92
H3F3AP84243 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
H3F3AP84243 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
H3F3AP84243 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.08□□□□□ -1.92
H3F3AP84243 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 RAD1P1-201ENST00000231383 813 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 RNA5SP119-201ENST00000362715 117 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
H3F3AP84243 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 HSPE1P26-201ENST00000405341 275 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.08□□□□□ -1.92
H3F3AP84243 AL158071.1-201ENST00000430315 461 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AL050321.1-201ENST00000432363 400 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 NEK4P1-201ENST00000433383 879 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AC105402.2-201ENST00000438503 358 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 RPS4XP2-201ENST00000458402 793 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 RPS4XP22-201ENST00000480755 780 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 PCBP2P3-201ENST00000509726 843 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.08□□□□□ -1.92
H3F3AP84243 AC023141.12-201ENST00000512399 199 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.08□□□□□ -1.92
H3F3AP84243 RN7SKP157-201ENST00000516174 282 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 SNORD116-30-201ENST00000516468 85 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 SNORA70.19-201ENST00000516717 90 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.08□□□□□ -1.92
H3F3AP84243 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.08□□□□□ -1.92
H3F3AP84243 OR5D17P-201ENST00000531492 978 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.08□□□□□ -1.92
H3F3AP84243 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.08□□□□□ -1.92
H3F3AP84243 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.08□□□□□ -1.92
H3F3AP84243 ZNF192P1-203ENST00000565888 810 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AC006557.5-201ENST00000603126 811 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.08□□□□□ -1.92
H3F3AP84243 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.08□□□□□ -1.92
H3F3AP84243 XIST_intron.1-201ENST00000619444 68 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 AC110801.1-201ENST00000623590 212 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.08□□□□□ -1.92
H3F3AP84243 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.08□□□□□ -1.92
H3F3AP84243 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
H3F3AP84243 AL645937.1-201ENST00000641739 1652 ntBASIC3.08□□□□□ -1.92
H3F3AP84243 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.07□□□□□ -1.92
H3F3AP84243 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
H3F3AP84243 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
H3F3AP84243 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
H3F3AP84243 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
H3F3AP84243 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
H3F3AP84243 RNU4-35P-201ENST00000362588 141 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms