Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 MTND5P33-201ENST00000571250 1450 ntBASIC5.38□□□□□ -1.55
RNF4P78317 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.37□□□□□ -1.55
RNF4P78317 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 AC130650.2-201ENST00000618736 2403 ntBASIC5.37□□□□□ -1.55
RNF4P78317 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
RNF4P78317 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.37□□□□□ -1.55
RNF4P78317 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 SNORA51.2-201ENST00000364595 132 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RN7SKP6-201ENST00000364795 319 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RNU1-59P-201ENST00000364829 162 ntBASIC5.37□□□□□ -1.55
RNF4P78317 Y_RNA.326-201ENST00000365176 113 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RN7SKP292-201ENST00000365522 317 ntBASIC5.37□□□□□ -1.55
RNF4P78317 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 RNU6-1226P-201ENST00000384317 107 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AL031985.1-201ENST00000392713 418 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RNA5SP296-201ENST00000410523 111 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AC069218.2-201ENST00000411665 344 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RPL35AP24-201ENST00000413846 330 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.37□□□□□ -1.55
RNF4P78317 AC073136.2-201ENST00000417282 849 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RIMKLBP2-201ENST00000424737 654 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AL031736.2-201ENST00000426573 787 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 AC012075.1-201ENST00000436549 580 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.37□□□□□ -1.55
RNF4P78317 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 MTND1P18-201ENST00000448191 573 ntBASIC5.37□□□□□ -1.55
RNF4P78317 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 AC243772.1-201ENST00000451620 410 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AL121877.1-201ENST00000453704 622 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AL035090.1-201ENST00000454835 332 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AC007537.2-201ENST00000472093 511 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AC006539.1-201ENST00000481419 501 ntBASIC5.37□□□□□ -1.55
RNF4P78317 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC5.37□□□□□ -1.55
RNF4P78317 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.37□□□□□ -1.55
RNF4P78317 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 AC112206.3-201ENST00000514578 389 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RNU6-277P-201ENST00000516272 106 ntBASIC5.37□□□□□ -1.55
RNF4P78317 snoU109.6-201ENST00000516831 118 ntBASIC5.37□□□□□ -1.55
RNF4P78317 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 AL121821.2-201ENST00000556081 394 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.37□□□□□ -1.55
RNF4P78317 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 UBE2L4-201ENST00000587688 464 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AC098848.2-201ENST00000588023 330 ntBASIC5.37□□□□□ -1.55
RNF4P78317 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.37□□□□□ -1.55
RNF4P78317 uc_338.5-201ENST00000611839 155 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
RNF4P78317 U1.25-201ENST00000614085 162 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RN7SL544P-201ENST00000617232 284 ntBASIC5.37□□□□□ -1.55
RNF4P78317 RN7SL763P-201ENST00000620922 284 ntBASIC5.37□□□□□ -1.55
RNF4P78317 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
RNF4P78317 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
RNF4P78317 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
RNF4P78317 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
RNF4P78317 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
RNF4P78317 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.36□□□□□ -1.55
RNF4P78317 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.36□□□□□ -1.55
RNF4P78317 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.36□□□□□ -1.55
RNF4P78317 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 RNU6-1097P-201ENST00000363586 107 ntBASIC5.36□□□□□ -1.55
RNF4P78317 Y_RNA.234-201ENST00000364409 97 ntBASIC5.36□□□□□ -1.55
RNF4P78317 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
RNF4P78317 RNU6-1148P-201ENST00000410992 104 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.36□□□□□ -1.55
RNF4P78317 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.36□□□□□ -1.55
RNF4P78317 COX6CP15-201ENST00000426313 211 ntBASIC5.36□□□□□ -1.55
RNF4P78317 HMGB3P24-201ENST00000433260 622 ntBASIC5.36□□□□□ -1.55
RNF4P78317 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.36□□□□□ -1.55
RNF4P78317 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.36□□□□□ -1.55
RNF4P78317 CYCSP12-201ENST00000437729 300 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms