Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A4P53420 AC105272.1-201ENST00000438604 198 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 MTCO3P17-201ENST00000443775 513 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC3.54□□□□□ -1.84
COL4A4P53420 AC089999.1-201ENST00000460336 374 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 AC021678.1-201ENST00000505195 936 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 TPT1P8-201ENST00000510120 555 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 AC110760.3-202ENST00000515177 371 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 AC087276.1-201ENST00000529659 480 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 AC084033.1-201ENST00000550830 633 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A4P53420 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A4P53420 IGHV3-29-201ENST00000604817 344 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A4P53420 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A4P53420 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A4P53420 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A4P53420 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL4A4P53420 AC000123.3-201ENST00000624029 4975 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 MIR30E-201ENST00000362104 92 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 MIR422A-201ENST00000362286 90 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
COL4A4P53420 AL031679.1-201ENST00000400616 525 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.53□□□□□ -1.84
COL4A4P53420 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.53□□□□□ -1.84
COL4A4P53420 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A4P53420 RPL35AP12-201ENST00000425362 338 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 MTCYBP11-201ENST00000447254 1109 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 AC005002.1-201ENST00000447458 540 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 RPL7P59-201ENST00000447700 943 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A4P53420 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A4P53420 SCARNA1-201ENST00000517138 166 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC3.53□□□□□ -1.84
COL4A4P53420 AP001636.2-201ENST00000525517 696 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.53□□□□□ -1.84
COL4A4P53420 AC022080.3-201ENST00000544433 482 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 AC023389.2-201ENST00000580031 955 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A4P53420 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A4P53420 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 RMST_8.1-201ENST00000610287 165 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COL4A4P53420 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.53□□□□□ -1.84
COL4A4P53420 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A4P53420 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
COL4A4P53420 MIR1261-201ENST00000408659 82 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A4P53420 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.52□□□□□ -1.85
COL4A4P53420 RPS26P40-201ENST00000435209 294 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC006028.1-201ENST00000438379 402 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A4P53420 AL500527.1-201ENST00000448532 255 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 TRBV8-2-201ENST00000475637 270 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A4P53420 AC010374.2-201ENST00000512933 535 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 MIR2114-201ENST00000516645 80 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC104072.1-201ENST00000568817 668 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A4P53420 Z82195.1-201ENST00000604558 398 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A4P53420 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
COL4A4P53420 RNU4-47P-201ENST00000410876 114 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 OR6K4P-201ENST00000423179 955 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC239809.1-201ENST00000450470 217 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC068587.2-201ENST00000478386 781 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 LARP7P4-201ENST00000481075 878 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.52□□□□□ -1.85
COL4A4P53420 KCTD9P6-201ENST00000522306 950 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A4P53420 AL139174.1-201ENST00000531489 886 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC087888.1-201ENST00000550884 1254 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 GTF3AP2-201ENST00000557014 266 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A4P53420 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A4P53420 MIR4769-201ENST00000584126 77 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC003001.2-201ENST00000616294 831 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 AC022306.3-201ENST00000619930 550 ntBASIC3.52□□□□□ -1.85
COL4A4P53420 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms