Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTPN4P29074 AC104446.1-201ENST00000613728 1321 ntBASIC3.93□□□□□ -1.78
PTPN4P29074 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTPN4P29074 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
PTPN4P29074 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTPN4P29074 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.93□□□□□ -1.78
PTPN4P29074 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTPN4P29074 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTPN4P29074 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTPN4P29074 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTPN4P29074 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PTPN4P29074 HSPE1P8-201ENST00000406997 288 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 SNORA11C-201ENST00000408532 129 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 BX664727.1-201ENST00000416024 466 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 HMGB3P5-201ENST00000428894 612 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 UBE2V1P6-201ENST00000430840 422 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.92□□□□□ -1.78
PTPN4P29074 BX276092.4-201ENST00000452056 248 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 BX248409.1-201ENST00000455497 255 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.92□□□□□ -1.78
PTPN4P29074 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.92□□□□□ -1.78
PTPN4P29074 AC091959.2-201ENST00000477363 321 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 TMED11P-201ENST00000479478 690 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 FTH1P21-201ENST00000512179 511 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 RNA5SP309-201ENST00000516670 106 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 RNU4-60P-201ENST00000517239 135 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 IGKV2D-23-201ENST00000518179 286 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 SOD1P3-201ENST00000518682 454 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.92□□□□□ -1.78
PTPN4P29074 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.92□□□□□ -1.78
PTPN4P29074 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.92□□□□□ -1.78
PTPN4P29074 AP004242.1-201ENST00000533701 349 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AL121576.1-201ENST00000556055 276 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AC022655.2-201ENST00000577280 318 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.92□□□□□ -1.78
PTPN4P29074 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PTPN4P29074 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.92□□□□□ -1.78
PTPN4P29074 AL390816.3-201ENST00000604527 1066 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AL049634.3-201ENST00000604968 457 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AC018754.1-201ENST00000607486 925 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AL591424.2-201ENST00000617023 128 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AC006249.1-201ENST00000621223 471 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 AP000943.4-201ENST00000622912 357 ntBASIC3.92□□□□□ -1.78
PTPN4P29074 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.92□□□□□ -1.78
PTPN4P29074 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
PTPN4P29074 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.92□□□□□ -1.78
PTPN4P29074 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.91□□□□□ -1.78
PTPN4P29074 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN4P29074 TNPO1P3-201ENST00000436471 2662 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 SNORA62.3-201ENST00000365110 153 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN4P29074 HLFP1-201ENST00000402375 499 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 PRRC2CP1-201ENST00000404428 159 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 BTBD10P2-201ENST00000404779 676 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 MIR1250-201ENST00000408098 113 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 MIR1251-201ENST00000408552 70 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RN7SKP159-201ENST00000410657 292 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.91□□□□□ -1.78
PTPN4P29074 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN4P29074 AL512637.2-201ENST00000431287 1256 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RPL21P110-201ENST00000433345 446 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RPL23AP33-201ENST00000442301 452 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 EXTL2P1-201ENST00000446218 416 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 FABP3P2-201ENST00000453169 399 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RPS20P32-201ENST00000456044 356 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 GTF2IP12-201ENST00000456547 356 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RPL38P1-201ENST00000460914 211 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RN7SL542P-201ENST00000467147 294 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AP002812.1-201ENST00000495378 474 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 OR5H3P-201ENST00000502817 919 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AC008885.2-201ENST00000509506 930 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN4P29074 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN4P29074 NPM1P41-201ENST00000512920 831 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RNU6-1231P-201ENST00000517185 103 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.91□□□□□ -1.78
PTPN4P29074 AC124293.1-201ENST00000530034 493 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AC092451.2-201ENST00000538746 658 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.91□□□□□ -1.78
PTPN4P29074 MIR4429-201ENST00000580105 73 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AP002906.1-201ENST00000603405 233 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AL451086.1-201ENST00000605596 223 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 BRDTP1-201ENST00000605735 677 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AC018926.1-201ENST00000616335 435 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN4P29074 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 AC080188.3-201ENST00000624842 748 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN4P29074 CASC19-261ENST00000641853 1638 ntBASIC3.91□□□□□ -1.78
PTPN4P29074 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN4P29074 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.9□□□□□ -1.78
PTPN4P29074 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.9□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms