Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
LIG1P18858 DBIP1-201ENST00000401435 260 ntBASIC6.16□□□□□ -1.42
LIG1P18858 AL590004.1-201ENST00000405321 300 ntBASIC6.16□□□□□ -1.42
LIG1P18858 RN7SKP229-201ENST00000410465 302 ntBASIC6.16□□□□□ -1.42
LIG1P18858 RN7SKP293-201ENST00000411389 296 ntBASIC6.16□□□□□ -1.42
LIG1P18858 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 USP9YP36-201ENST00000424581 829 ntBASIC6.16□□□□□ -1.42
LIG1P18858 NDUFA5P4-201ENST00000436704 385 ntBASIC6.16□□□□□ -1.42
LIG1P18858 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG1P18858 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.16□□□□□ -1.42
LIG1P18858 TRGVB-201ENST00000453257 471 ntBASIC6.16□□□□□ -1.42
LIG1P18858 AC245028.2-201ENST00000458673 253 ntBASIC6.16□□□□□ -1.42
LIG1P18858 AC097493.1-201ENST00000463958 372 ntBASIC6.16□□□□□ -1.42
LIG1P18858 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG1P18858 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG1P18858 AC006499.2-201ENST00000513470 337 ntBASIC6.16□□□□□ -1.42
LIG1P18858 TBCA-203ENST00000517679 545 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG1P18858 RGS4-207ENST00000527809 817 ntTSL 4 BASIC6.16□□□□□ -1.42
LIG1P18858 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG1P18858 AC022832.1-201ENST00000530718 645 ntBASIC6.16□□□□□ -1.42
LIG1P18858 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.16□□□□□ -1.42
LIG1P18858 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC6.16□□□□□ -1.42
LIG1P18858 AC127381.1-201ENST00000555979 939 ntBASIC6.16□□□□□ -1.42
LIG1P18858 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG1P18858 RPL12P25-202ENST00000598100 674 ntBASIC6.16□□□□□ -1.42
LIG1P18858 ATE1-AS1-202ENST00000636460 506 ntBASIC6.16□□□□□ -1.42
LIG1P18858 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
LIG1P18858 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG1P18858 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG1P18858 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG1P18858 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG1P18858 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG1P18858 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
LIG1P18858 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
LIG1P18858 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
LIG1P18858 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC6.15□□□□□ -1.42
LIG1P18858 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG1P18858 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
LIG1P18858 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
LIG1P18858 NAP1L4P1-201ENST00000319092 1157 ntBASIC6.15□□□□□ -1.42
LIG1P18858 U8.3-201ENST00000363321 132 ntBASIC6.15□□□□□ -1.42
LIG1P18858 RNA5SP223-201ENST00000365174 120 ntBASIC6.15□□□□□ -1.42
LIG1P18858 SNORD115.1-201ENST00000391109 76 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.15□□□□□ -1.42
LIG1P18858 SNRPEP10-201ENST00000420249 274 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.15□□□□□ -1.42
LIG1P18858 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG1P18858 NPM1P34-201ENST00000428821 893 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AL121776.1-201ENST00000429337 372 ntBASIC6.15□□□□□ -1.42
LIG1P18858 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.15□□□□□ -1.42
LIG1P18858 AL450023.1-201ENST00000450868 751 ntBASIC6.15□□□□□ -1.42
LIG1P18858 EIF4A1P11-201ENST00000451239 222 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG1P18858 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG1P18858 C1DP4-201ENST00000455429 424 ntBASIC6.15□□□□□ -1.42
LIG1P18858 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC6.15□□□□□ -1.42
LIG1P18858 AC007182.2-201ENST00000489251 402 ntBASIC6.15□□□□□ -1.42
LIG1P18858 RN7SL591P-201ENST00000496150 292 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC112204.1-201ENST00000502591 103 ntBASIC6.15□□□□□ -1.42
LIG1P18858 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
LIG1P18858 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
LIG1P18858 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG1P18858 AP003122.4-201ENST00000530980 758 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG1P18858 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.15□□□□□ -1.42
LIG1P18858 NMNAT1P1-201ENST00000554095 876 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC087477.6-201ENST00000559595 843 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG1P18858 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC6.15□□□□□ -1.42
LIG1P18858 MIR544B-201ENST00000582372 78 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC010928.3-201ENST00000587712 541 ntBASIC6.15□□□□□ -1.42
LIG1P18858 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.15□□□□□ -1.42
LIG1P18858 AC087283.1-201ENST00000604029 1074 ntBASIC6.15□□□□□ -1.42
LIG1P18858 Y_RNA.812-201ENST00000610788 101 ntBASIC6.15□□□□□ -1.42
LIG1P18858 Y_RNA.784-201ENST00000613803 101 ntBASIC6.15□□□□□ -1.42
LIG1P18858 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.15□□□□□ -1.42
LIG1P18858 Y_RNA.787-201ENST00000616522 101 ntBASIC6.15□□□□□ -1.42
LIG1P18858 Y_RNA.780-201ENST00000617336 101 ntBASIC6.15□□□□□ -1.42
LIG1P18858 Y_RNA.801-201ENST00000619005 101 ntBASIC6.15□□□□□ -1.42
LIG1P18858 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC6.15□□□□□ -1.42
LIG1P18858 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.15□□□□□ -1.43
LIG1P18858 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.15□□□□□ -1.43
LIG1P18858 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
LIG1P18858 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.15□□□□□ -1.43
LIG1P18858 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
LIG1P18858 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
LIG1P18858 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms