Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MCTS2P-201ENST00000394552 546 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 RNU6ATAC-201ENST00000408749 126 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 VTA1P1-201ENST00000414044 866 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 OR8F1P-201ENST00000425243 930 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD4P09016 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD4P09016 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD4P09016 MTND1P33-201ENST00000446251 917 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 SEPT14P24-201ENST00000447236 180 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 VN1R105P-201ENST00000486595 910 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD4P09016 NIPA2P2-201ENST00000496376 1083 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 AC104164.2-201ENST00000496953 495 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD4P09016 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD4P09016 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD4P09016 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD4P09016 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXD4P09016 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXD4P09016 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD4P09016 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXD4P09016 AC096586.1-201ENST00000610267 561 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 FRG1HP-204ENST00000617940 757 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
HOXD4P09016 CR392039.4-201ENST00000624968 501 ntBASIC3.74□□□□□ -1.81
HOXD4P09016 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXD4P09016 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
HOXD4P09016 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
HOXD4P09016 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
HOXD4P09016 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXD4P09016 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD4P09016 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD4P09016 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD4P09016 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
HOXD4P09016 OR11H4-201ENST00000315409 1082 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 RNU1-87P-201ENST00000363727 170 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HOXD4P09016 RPL7P27-201ENST00000403775 720 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 SSR1P2-201ENST00000415208 787 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 AL159169.1-201ENST00000421119 127 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 AC092648.1-201ENST00000425870 423 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AL035246.1-201ENST00000433554 1255 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD4P09016 OR51B8P-201ENST00000449892 769 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC091564.1-201ENST00000464563 479 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 RPL6P9-201ENST00000466502 859 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 PPIAP15-201ENST00000479662 484 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC104687.1-201ENST00000485829 412 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 HPRT1P2-201ENST00000505250 544 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 RNU6-1028P-201ENST00000517164 93 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD4P09016 OR8I1P-201ENST00000529291 931 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 AC087897.1-201ENST00000550134 156 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXD4P09016 AL357094.1-201ENST00000603845 844 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD4P09016 MIR432-201ENST00000606207 94 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 PART1_2.1-201ENST00000612397 250 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC099669.2-201ENST00000616549 437 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC009159.2-201ENST00000617603 606 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 MIR7702-201ENST00000621931 59 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AC112200.1-201ENST00000625015 234 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.73□□□□□ -1.81
HOXD4P09016 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HOXD4P09016 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD4P09016 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.73□□□□□ -1.81
HOXD4P09016 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD4P09016 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD4P09016 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD4P09016 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD4P09016 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD4P09016 AL353743.4-201ENST00000422653 1547 ntBASIC3.72□□□□□ -1.81
HOXD4P09016 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
HOXD4P09016 RNU6-906P-201ENST00000384700 70 ntBASIC3.72□□□□□ -1.81
HOXD4P09016 MIR200C-201ENST00000384980 68 ntBASIC3.72□□□□□ -1.81
HOXD4P09016 SNORD66.1-201ENST00000391230 76 ntBASIC3.72□□□□□ -1.81
HOXD4P09016 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms