Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 MIR16-1-201ENST00000385271 89 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU11-4P-201ENST00000391149 133 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 SSXP10-201ENST00000402595 565 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AL355379.1-201ENST00000405542 640 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 HDGFP1-201ENST00000405943 252 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC096632.1-201ENST00000427395 310 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC010469.1-201ENST00000463864 576 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 GAPDHP36-201ENST00000480688 918 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 RPS4XP18-201ENST00000495480 763 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC026414.1-201ENST00000504046 698 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC069306.1-201ENST00000507006 843 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 MTND4P9-201ENST00000507819 1346 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC118282.2-201ENST00000508739 374 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-416P-201ENST00000516265 103 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AP000255.1-201ENST00000610276 676 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC140113.4-201ENST00000622087 222 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 AC005086.4-201ENST00000623065 213 ntBASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDHGA1Q9Y5H4 FAM91A3P-201ENST00000456826 2544 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 OR11H4-201ENST00000315409 1082 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF603P-201ENST00000405613 487 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 LIPT1P1-201ENST00000415870 1186 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 EIF4EP1-201ENST00000422311 642 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 PTP4A1P7-201ENST00000423476 514 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 Z74021.1-201ENST00000423610 407 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC010881.1-201ENST00000433830 235 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 B3GNT2P1-201ENST00000434960 952 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 RPL23AP83-201ENST00000434984 473 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU7-140P-201ENST00000459546 60 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC010307.1-201ENST00000467206 836 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC078817.1-201ENST00000492623 435 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC108022.1-201ENST00000493466 478 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 RPS6P4-201ENST00000494693 758 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC008427.1-201ENST00000503102 655 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-202P-201ENST00000515998 96 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 EIF5A2P1-201ENST00000564027 460 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC074051.3-201ENST00000570238 358 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC006270.2-201ENST00000578523 652 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC025946.2-201ENST00000603398 234 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 SNORA51-201ENST00000606420 132 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AL121594.5-201ENST00000631724 573 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 AC055839.1-201ENST00000634467 498 ntBASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms