Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MED28P3-201ENST00000444288 531 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AL138752.1-201ENST00000452964 351 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AP1S2P1-201ENST00000457344 379 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 RPS4XP14-201ENST00000493072 781 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.715-201ENST00000517082 110 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AP000857.1-201ENST00000532151 543 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC006254.3-201ENST00000603353 884 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC104662.1-201ENST00000604448 511 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AP004247.3-201ENST00000608682 624 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 AC022467.1-201ENST00000614738 749 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 U2.14-201ENST00000615943 113 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 MAPK10-287ENST00000641217 3037 ntBASIC6.39□□□□□ -1.39
NPAS3Q8IXF0 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.65-201ENST00000362846 100 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 SNORD3E-201ENST00000362899 217 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 SNORD50.1-201ENST00000362987 71 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.214-201ENST00000364201 112 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 Y_RNA.416-201ENST00000384014 113 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC016769.2-201ENST00000414815 475 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 ELOCP20-201ENST00000422460 345 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 CYCSP24-201ENST00000445119 316 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC243772.1-201ENST00000451620 410 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AL445665.1-202ENST00000452436 324 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC022493.2-201ENST00000506122 481 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 HMGN1P9-201ENST00000515212 298 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 RN7SKP219-201ENST00000516825 296 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 WBP1LP3-201ENST00000523033 208 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AP000648.1-201ENST00000529682 397 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 SNORD95-201ENST00000579879 68 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC067852.5-201ENST00000589299 310 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 COX6CP7-201ENST00000597056 208 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 Z82243.1-201ENST00000609432 473 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AL352984.2-201ENST00000611153 546 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 RN7SL787P-201ENST00000613000 284 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 CR381572.1-201ENST00000625098 102 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AL606534.2-204ENST00000635008 178 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AL049767.1-202ENST00000637826 242 ntBASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
NPAS3Q8IXF0 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms