Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FABP5P12-201ENST00000515543 389 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC023632.4-201ENST00000517783 191 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 IGHV3-32-201ENST00000519182 355 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL049839.1-201ENST00000556151 657 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 VN1R79P-201ENST00000593540 513 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC005191.1-201ENST00000603950 358 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC025588.2-201ENST00000604851 466 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 Z99289.3-201ENST00000605586 594 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC113194.1-201ENST00000606037 500 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL354760.1-201ENST00000608357 643 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AC069209.1-201ENST00000619282 651 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AL022401.1-201ENST00000619498 108 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 RNU6-156P-201ENST00000621869 107 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 AP002782.1-201ENST00000623107 614 ntBASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PDLIM3Q53GG5 NOL8P1-201ENST00000508336 3529 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC095050.2-201ENST00000510748 1458 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC109315.1-201ENST00000584143 1347 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RNU6-1066P-201ENST00000363573 105 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 Y_RNA.192-201ENST00000363977 102 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RNA5SP167-201ENST00000365461 116 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 SNORD116-23-201ENST00000384645 92 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AL139098.1-201ENST00000407291 389 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RN7SKP106-201ENST00000410832 272 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 GTF2IP5-201ENST00000414608 731 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RPS24P7-201ENST00000416921 246 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 BOLA3P4-201ENST00000418151 400 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AL645608.4-201ENST00000423619 154 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 Z93242.1-201ENST00000427102 353 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 OR2B7P-201ENST00000429302 934 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 GTF2IP7-202ENST00000436677 309 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RPS27AP15-201ENST00000447672 466 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 Z99714.1-201ENST00000450463 807 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC146507.1-201ENST00000468335 354 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC087385.1-201ENST00000475062 312 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC126121.1-201ENST00000482313 553 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC092045.1-201ENST00000495716 1231 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC007016.1-201ENST00000512110 244 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RN7SKP276-201ENST00000516242 268 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RNA5SP135-201ENST00000517019 125 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AGGF1P8-201ENST00000562979 1000 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 MIR4504-201ENST00000577413 92 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RN7SL176P-201ENST00000580352 264 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC008782.1-201ENST00000603386 430 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC080013.3-201ENST00000606839 578 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC107075.1-201ENST00000613695 314 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC055839.1-201ENST00000634467 498 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 AC008725.1-201ENST00000605123 2263 ntBASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PDLIM3Q53GG5 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 SAMMSON-226ENST00000642089 1582 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms