Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL359693.1-201ENST00000614959 2407 ntBASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 DNAJC19P1-201ENST00000455312 319 ntBASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 ARL2BPP6-201ENST00000512757 439 ntBASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 MIR4319-201ENST00000577285 85 ntBASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC88AQ3V6T2 BMS1P22-201ENST00000414726 313 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 RPL37P4-201ENST00000448908 268 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AC140076.1-201ENST00000449897 361 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AC126389.1-201ENST00000477436 290 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 S100A11P1-201ENST00000477525 312 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 PCBP2P3-201ENST00000509726 843 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 OR4R3P-201ENST00000525084 838 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AC008126.1-201ENST00000549019 480 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AC025946.2-201ENST00000603398 234 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AL359535.1-201ENST00000612100 1087 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 AL136360.1-201ENST00000503377 1900 ntBASIC3.96□□□□□ -1.77
CCDC88AQ3V6T2 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 AF117829.1-206ENST00000621883 3802 ntBASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 SNORA79B-201ENST00000410557 148 ntBASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 AC012065.2-201ENST00000421295 375 ntBASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 AC112184.1-201ENST00000505179 312 ntBASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC88AQ3V6T2 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 AC104446.1-201ENST00000613728 1321 ntBASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 RPL23AP67-201ENST00000465341 474 ntBASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 AC103783.1-201ENST00000520506 373 ntBASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 COX6CP8-201ENST00000522620 226 ntBASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 AC231759.1-201ENST00000616455 597 ntBASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 CR383658.2-201ENST00000547576 1525 ntBASIC3.95□□□□□ -1.78
CCDC88AQ3V6T2 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 BTF3P9-201ENST00000418784 283 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 SETP10-201ENST00000424368 814 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 RPS26P40-201ENST00000435209 294 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 RPS3AP43-201ENST00000479743 781 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 CYP2C60P-201ENST00000566088 139 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 MIR2682-201ENST00000580305 110 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC067852.4-201ENST00000590314 478 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AL162574.2-201ENST00000614618 657 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 IGHVIII-44-202ENST00000636235 289 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 RNU4-82P-201ENST00000362443 140 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC034159.1-201ENST00000513885 583 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 AP003485.2-201ENST00000623636 610 ntBASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88AQ3V6T2 RPS4XP5-202ENST00000449995 1334 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 OR5J1P-201ENST00000313544 939 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 MIR30E-201ENST00000362104 92 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms