Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.57□□□□□ -1.84
COL4A4P53420 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
COL4A4P53420 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 CEP170P1-201ENST00000502249 4587 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC011503.2-201ENST00000594230 1500 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 RNA5SP31-201ENST00000411144 127 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.56□□□□□ -1.84
COL4A4P53420 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.56□□□□□ -1.84
COL4A4P53420 AL356806.1-201ENST00000422524 916 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A4P53420 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.56□□□□□ -1.84
COL4A4P53420 MRPS18BP2-201ENST00000434310 759 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 AL121890.1-201ENST00000435457 205 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 HMGB3P9-201ENST00000441799 583 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A4P53420 MTCO3P20-201ENST00000454926 688 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 RNU6-415P-201ENST00000516252 97 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 NDUFB9P3-201ENST00000521269 501 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.56□□□□□ -1.84
COL4A4P53420 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.56□□□□□ -1.84
COL4A4P53420 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
COL4A4P53420 AC016597.2-201ENST00000613256 341 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 AC016911.1-201ENST00000613297 452 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.56□□□□□ -1.84
COL4A4P53420 AP000484.1-201ENST00000620067 1252 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.56□□□□□ -1.84
COL4A4P53420 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
COL4A4P53420 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.56□□□□□ -1.84
COL4A4P53420 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 AL645568.2-201ENST00000432815 1337 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL4A4P53420 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
COL4A4P53420 OTUD4P1-201ENST00000237841 3067 ntBASIC3.56□□□□□ -1.84
COL4A4P53420 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A4P53420 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.55□□□□□ -1.84
COL4A4P53420 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A4P53420 SMC4P1-201ENST00000414479 527 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A4P53420 DNAJC19P1-201ENST00000455312 319 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 RPS29P26-201ENST00000477483 171 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3.55□□□□□ -1.84
COL4A4P53420 RNA5SP356-201ENST00000515972 94 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A4P53420 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A4P53420 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.55□□□□□ -1.84
COL4A4P53420 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 AL049844.2-201ENST00000604280 628 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AL139022.2-201ENST00000606934 443 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 PCA3_2.1-201ENST00000612507 409 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC016542.2-201ENST00000624201 619 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A4P53420 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A4P53420 AL513302.2-201ENST00000562313 1842 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A4P53420 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A4P53420 MIR449A-201ENST00000362113 91 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC104297.1-201ENST00000393779 870 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 RNU2-72P-201ENST00000411175 163 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 ZYG11AP1-201ENST00000430329 837 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.55□□□□□ -1.84
COL4A4P53420 RPL32P28-201ENST00000443577 397 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AL357552.1-201ENST00000445254 415 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 BX276092.4-201ENST00000452056 248 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 DNAJC19P8-201ENST00000452887 259 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 OFD1P3Y-201ENST00000453312 783 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC093801.2-201ENST00000503966 1050 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A4P53420 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.55□□□□□ -1.84
COL4A4P53420 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A4P53420 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 COX6B1P6-201ENST00000522347 255 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.55□□□□□ -1.84
COL4A4P53420 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A4P53420 AC091948.2-201ENST00000636510 279 ntBASIC3.55□□□□□ -1.84
COL4A4P53420 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
COL4A4P53420 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A4P53420 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL4A4P53420 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
COL4A4P53420 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A4P53420 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A4P53420 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A4P53420 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
COL4A4P53420 AL138885.1-201ENST00000405921 675 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 HMGN1P24-201ENST00000412282 298 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 RPL30P2-201ENST00000414021 291 ntBASIC3.54□□□□□ -1.84
COL4A4P53420 AL353705.1-201ENST00000433468 480 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms