Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA1P49639 Y_RNA.51-201ENST00000362725 102 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RN7SKP162-201ENST00000363605 345 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RNU1-89P-201ENST00000384592 164 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RNU6-253P-201ENST00000384730 105 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RPL23AP29-201ENST00000397284 453 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 MTCO3P31-201ENST00000405526 789 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 VN1R8P-201ENST00000407739 893 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RNU6-920P-201ENST00000410926 92 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RPL23AP26-201ENST00000412728 464 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 TPT1P2-201ENST00000413105 503 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA1P49639 RBMY2KP-201ENST00000418221 992 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 MORF4L1P6-201ENST00000418771 268 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA1P49639 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC019178.2-201ENST00000423595 505 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 OR52B5P-201ENST00000435337 951 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AL163193.1-201ENST00000444895 788 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC104651.2-201ENST00000447549 528 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 DDX39BP2-208ENST00000453923 258 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AL389915.2-201ENST00000454576 441 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA1P49639 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA1P49639 RPL31P3-201ENST00000458430 332 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 PPIAP15-201ENST00000479662 484 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC090013.1-201ENST00000485147 480 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC104685.1-201ENST00000502445 371 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC112198.1-201ENST00000505369 1220 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC091435.1-201ENST00000505442 584 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 HMGB1P28-201ENST00000507778 552 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 RNU6-1261P-201ENST00000517194 104 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA1P49639 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC022832.1-201ENST00000530718 645 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC092490.3-201ENST00000545370 572 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA1P49639 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA1P49639 AL512347.1-201ENST00000566420 503 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC110743.1-201ENST00000584870 478 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 NBR2-204ENST00000587322 63 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AL590229.1-201ENST00000603497 542 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AP000811.1-201ENST00000603803 651 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC245297.2-201ENST00000610119 565 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC073114.1-201ENST00000612027 490 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 Z69908.1-201ENST00000622603 247 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXA1P49639 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXA1P49639 THAP12P4-201ENST00000528321 2266 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AL445523.1-201ENST00000451184 1362 ntBASIC3.84□□□□□ -1.79
HOXA1P49639 AL390862.1-201ENST00000635467 1469 ntBASIC3.84□□□□□ -1.8
HOXA1P49639 AC006971.1-201ENST00000407916 4486 ntBASIC3.84□□□□□ -1.8
HOXA1P49639 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
HOXA1P49639 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA1P49639 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
HOXA1P49639 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA1P49639 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 MAPK10-372ENST00000641954 3413 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXA1P49639 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 RNU6-1293P-201ENST00000384077 107 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA1P49639 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC3.83□□□□□ -1.8
HOXA1P49639 RN7SKP177-201ENST00000410567 355 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 RHEBP3-201ENST00000411920 351 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 NPM1P11-201ENST00000417106 855 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 OR2AM1P-201ENST00000422137 422 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 MTND1P20-201ENST00000430341 950 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 TAF9P1-201ENST00000445421 515 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 ANP32BP2-201ENST00000454525 545 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 TAF9P2-201ENST00000454958 515 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA1P49639 ARPC3P2-201ENST00000457786 533 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 RPL7P38-201ENST00000488396 739 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA1P49639 AC024558.1-201ENST00000505008 528 ntBASIC3.83□□□□□ -1.8
HOXA1P49639 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms