Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC083809.1-201ENST00000615051 472 ntBASIC4.13□□□□□ -1.75
MSH3P20585 AC123768.4-201ENST00000616244 701 ntBASIC4.13□□□□□ -1.75
MSH3P20585 AC231759.1-201ENST00000616455 597 ntBASIC4.13□□□□□ -1.75
MSH3P20585 AC009318.3-201ENST00000616916 503 ntBASIC4.13□□□□□ -1.75
MSH3P20585 AC048344.4-201ENST00000619744 527 ntBASIC4.13□□□□□ -1.75
MSH3P20585 AC016717.3-201ENST00000624730 554 ntBASIC4.13□□□□□ -1.75
MSH3P20585 ATE1-AS1-202ENST00000636460 506 ntBASIC4.13□□□□□ -1.75
MSH3P20585 ZNF663P-202ENST00000641770 1131 ntBASIC4.13□□□□□ -1.75
MSH3P20585 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
MSH3P20585 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.13□□□□□ -1.75
MSH3P20585 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
MSH3P20585 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
MSH3P20585 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
MSH3P20585 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
MSH3P20585 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.13□□□□□ -1.75
MSH3P20585 IQCB2P-201ENST00000401788 1633 ntBASIC4.13□□□□□ -1.75
MSH3P20585 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
MSH3P20585 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSH3P20585 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
MSH3P20585 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.12□□□□□ -1.75
MSH3P20585 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSH3P20585 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.12□□□□□ -1.75
MSH3P20585 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSH3P20585 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSH3P20585 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 OR1L1-202ENST00000373686 1083 ntBASIC4.12□□□□□ -1.75
MSH3P20585 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSH3P20585 RPL31P52-201ENST00000407532 367 ntBASIC4.12□□□□□ -1.75
MSH3P20585 RNA5SP39-201ENST00000411245 120 ntBASIC4.12□□□□□ -1.75
MSH3P20585 JKAMPP1-201ENST00000413804 919 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC108032.1-201ENST00000416706 207 ntBASIC4.12□□□□□ -1.75
MSH3P20585 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.12□□□□□ -1.75
MSH3P20585 AL009174.1-201ENST00000426577 416 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 RPL7P34-201ENST00000433316 712 ntBASIC4.12□□□□□ -1.75
MSH3P20585 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.12□□□□□ -1.75
MSH3P20585 GSTA7P-201ENST00000438425 448 ntBASIC4.12□□□□□ -1.75
MSH3P20585 TPTE2P6-202ENST00000445572 1007 ntBASIC4.12□□□□□ -1.75
MSH3P20585 YWHAQP9-201ENST00000445891 512 ntBASIC4.12□□□□□ -1.75
MSH3P20585 PTENP1-201ENST00000447117 1215 ntBASIC4.12□□□□□ -1.75
MSH3P20585 MRPL42P4-201ENST00000453267 443 ntBASIC4.12□□□□□ -1.75
MSH3P20585 MRPL35P4-201ENST00000453682 566 ntBASIC4.12□□□□□ -1.75
MSH3P20585 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSH3P20585 AC006511.1-201ENST00000470614 315 ntBASIC4.12□□□□□ -1.75
MSH3P20585 RPS27AP13-201ENST00000498403 237 ntBASIC4.12□□□□□ -1.75
MSH3P20585 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 AC023632.1-201ENST00000518463 375 ntBASIC4.12□□□□□ -1.75
MSH3P20585 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.12□□□□□ -1.75
MSH3P20585 MRPS36P5-201ENST00000551909 298 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC090695.1-201ENST00000561269 1222 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC090751.1-201ENST00000566966 267 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 MIR5708-201ENST00000579723 85 ntBASIC4.12□□□□□ -1.75
MSH3P20585 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 VN1R78P-201ENST00000597393 564 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC008751.2-201ENST00000597885 980 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AL139286.1-201ENST00000604465 483 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AL355816.1-201ENST00000607951 118 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC007349.4-201ENST00000608114 532 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC092954.1-201ENST00000609121 445 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AC103858.2-201ENST00000621471 543 ntBASIC4.12□□□□□ -1.75
MSH3P20585 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH3P20585 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
MSH3P20585 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 AC134882.1-201ENST00000603738 1676 ntBASIC4.12□□□□□ -1.75
MSH3P20585 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH3P20585 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
MSH3P20585 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 RPS26P8-201ENST00000393490 348 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 RNU2-6P-201ENST00000411404 190 ntBASIC4.11□□□□□ -1.75
MSH3P20585 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.11□□□□□ -1.75
MSH3P20585 ELOCP9-201ENST00000418624 239 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC073069.1-201ENST00000428657 441 ntBASIC4.11□□□□□ -1.75
MSH3P20585 HIGD1AP4-201ENST00000430194 280 ntBASIC4.11□□□□□ -1.75
MSH3P20585 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.11□□□□□ -1.75
MSH3P20585 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.11□□□□□ -1.75
MSH3P20585 MTATP6P26-201ENST00000445926 662 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms