Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A1P12109 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A1P12109 AL512286.1-201ENST00000439244 400 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 HMGB3P21-201ENST00000452483 547 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 RN7SL197P-201ENST00000466981 299 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC010618.1-201ENST00000469924 477 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 UBTFL6-201ENST00000477929 1024 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A1P12109 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A1P12109 SCARNA22-201ENST00000503991 125 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A1P12109 SNORD116-26-201ENST00000516006 96 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 RNA5SP392-201ENST00000516905 112 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AF186190.1-201ENST00000517470 480 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.54□□□□□ -1.52
COL6A1P12109 OR5AK1P-201ENST00000524837 922 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 OR4R3P-201ENST00000525084 838 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AP002453.2-201ENST00000533503 320 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.54□□□□□ -1.52
COL6A1P12109 PCMTD1P2-201ENST00000565017 355 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A1P12109 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A1P12109 RPL12P25-202ENST00000598100 674 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC006566.1-201ENST00000608943 513 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC091304.9-201ENST00000612091 226 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 AC011944.2-201ENST00000624440 683 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 SCARNA15-201ENST00000607520 4325 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A1P12109 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A1P12109 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A1P12109 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A1P12109 AL592437.2-201ENST00000421655 2434 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 MTCO1P23-201ENST00000415223 1526 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
COL6A1P12109 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A1P12109 MAPK10-263ENST00000641052 4307 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 ZNF652P1-201ENST00000442420 1309 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 DCAF13P3-201ENST00000561147 1334 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.53□□□□□ -1.52
COL6A1P12109 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A1P12109 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 AL590240.1-201ENST00000334118 313 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 RNU5A-6P-201ENST00000384136 116 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 MIR181A1-201ENST00000385026 110 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 MIR16-1-201ENST00000385271 89 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL6A1P12109 TMSB4XP8-201ENST00000402089 135 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 RN7SKP263-201ENST00000411194 309 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 TMSB4XP6-201ENST00000415187 135 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 TMSB4XP1-201ENST00000424567 135 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 BLOC1S2P1-201ENST00000428431 301 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A1P12109 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.53□□□□□ -1.52
COL6A1P12109 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A1P12109 AC009238.2-201ENST00000431026 355 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A1P12109 MTND1P28-201ENST00000435623 950 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A1P12109 AP000942.1-201ENST00000463969 747 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A1P12109 RN7SL814P-201ENST00000487715 300 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A1P12109 RNU6-416P-201ENST00000516265 103 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.53□□□□□ -1.52
COL6A1P12109 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A1P12109 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A1P12109 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.53□□□□□ -1.52
COL6A1P12109 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A1P12109 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A1P12109 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.53□□□□□ -1.52
COL6A1P12109 AC093591.2-201ENST00000565254 3843 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 MIR4458-201ENST00000578872 75 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AC090312.2-201ENST00000582687 378 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A1P12109 AC005191.1-201ENST00000603950 358 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AC063943.3-201ENST00000615562 356 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 AC092794.2-201ENST00000620933 563 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 AL356596.1-201ENST00000624230 379 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A1P12109 AC099654.14-201ENST00000638599 341 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
COL6A1P12109 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A1P12109 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A1P12109 AC022031.1-201ENST00000585985 2593 ntBASIC5.53□□□□□ -1.52
COL6A1P12109 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A1P12109 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms