Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC068538.1-201ENST00000376856 336 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 ATP5F1P4-201ENST00000397288 746 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AL136133.1-201ENST00000413694 376 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 TIMM9P2-201ENST00000419324 266 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 Z99497.1-201ENST00000421282 135 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RGS17P1-201ENST00000423358 553 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RPP40P1-201ENST00000426762 456 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 B3GNT2P1-201ENST00000434960 952 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTCO2P16-201ENST00000436962 677 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTND2P20-201ENST00000440805 661 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 VN1R32P-201ENST00000452234 905 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTCO3P11-201ENST00000455103 774 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RPS15AP1-201ENST00000457423 391 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RPL7P1-201ENST00000468161 747 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RPL7P9-201ENST00000468715 747 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC092045.1-201ENST00000495716 1231 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTCYBP37-201ENST00000510642 1133 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTND5P13-201ENST00000513046 1079 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTCO2P32-201ENST00000514865 403 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MTCO1P30-201ENST00000515244 580 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 SNORA48.10-201ENST00000516965 160 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC007954.1-201ENST00000554198 494 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 BNIP3P5-201ENST00000562290 498 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC018552.3-201ENST00000567416 561 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 SNORA74C-1-201ENST00000580726 201 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AL391358.1-201ENST00000605342 190 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC091946.2-201ENST00000606105 291 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC008083.4-201ENST00000615076 444 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 AC123768.4-201ENST00000616244 701 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MIR7703-201ENST00000620784 77 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MFSD8-216ENST00000641147 4009 ntBASIC4.63□□□□□ -1.67
VPS4AQ9UN37 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS4AQ9UN37 ZNF833P-201ENST00000424938 1494 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 SNORA4.1-201ENST00000364263 144 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 Y_RNA.560-201ENST00000384689 102 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 RNA5SP332-201ENST00000391063 115 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL121978.1-201ENST00000402778 359 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL592291.1-201ENST00000403830 352 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 MTCO3P31-201ENST00000405526 789 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL138880.1-201ENST00000405824 642 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL450338.1-201ENST00000407987 512 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 RNA5SP113-201ENST00000410486 84 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 RNU6-920P-201ENST00000410926 92 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 RNU6-603P-201ENST00000411403 107 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 EIF4A1P3-201ENST00000411521 244 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL158073.1-201ENST00000426848 1104 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL360221.1-201ENST00000445989 335 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 MTCO3P16-201ENST00000454456 754 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 LAMTOR3P2-201ENST00000504479 232 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 GAPDHP56-201ENST00000506031 988 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 AC111000.3-201ENST00000508057 576 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS4AQ9UN37 ATP1B1P1-201ENST00000509767 915 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 RNU6-488P-201ENST00000515918 99 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 RNA5SP43-201ENST00000516559 110 ntBASIC4.62□□□□□ -1.67
VPS4AQ9UN37 NDUFA5P2-201ENST00000519723 344 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms