Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 SNORD105B-201ENST00000458770 79 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AP000563.1-201ENST00000490865 758 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 HMGN1P11-201ENST00000508668 303 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AL139174.1-201ENST00000531489 886 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 TGIF1P1-201ENST00000558095 802 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AC023158.1-201ENST00000561632 1025 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AP001542.1-201ENST00000591314 200 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 Z82195.1-201ENST00000604558 398 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AC135803.1-201ENST00000608748 565 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 RMST_8.1-201ENST00000610287 165 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 U4.6-201ENST00000621618 127 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AC090337.1-201ENST00000579651 2074 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
TREX1Q9NSU2 AC007342.9-201ENST00000623877 1385 ntBASIC3.51□□□□□ -1.85
TREX1Q9NSU2 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 RNA5SP124-201ENST00000362739 110 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 RNU6-317P-201ENST00000384031 107 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 HMGB1P10-201ENST00000395823 563 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 HSPE1P26-201ENST00000405341 275 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 HMGB1P13-201ENST00000406019 642 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AL356967.1-201ENST00000406305 431 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC009237.5-201ENST00000414271 501 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC007390.1-201ENST00000415722 356 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 SYF2P2-201ENST00000417620 583 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 EIF2S2P3-201ENST00000428356 999 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 RPL21P133-201ENST00000443666 476 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 U3.44-201ENST00000458938 192 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC005726.1-201ENST00000494679 427 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC020893.1-201ENST00000502452 580 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 RNU6-551P-201ENST00000516661 103 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 SOD1P3-201ENST00000518682 454 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 MIR548Y-201ENST00000582739 110 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AC067852.3-201ENST00000589177 561 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
TREX1Q9NSU2 OTUD4P1-201ENST00000237841 3067 ntBASIC3.5□□□□□ -1.85
TREX1Q9NSU2 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC073387.1-201ENST00000453261 709 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC021205.2-201ENST00000480069 347 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 ACTR3P3-201ENST00000480448 893 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 PTGES3P3-201ENST00000511479 482 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC010285.3-201ENST00000511668 676 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 RN7SKP18-201ENST00000516005 275 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 RNU1-95P-201ENST00000516357 160 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 RNU6-1004P-201ENST00000516584 111 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 RNU1-128P-201ENST00000516704 160 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 RN7SKP60-201ENST00000516985 239 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC106785.1-201ENST00000565935 262 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 MIR5047-201ENST00000579212 100 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AC006116.10-201ENST00000591836 581 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.49□□□□□ -1.85
TREX1Q9NSU2 MIR7973-1-201ENST00000614683 76 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 MIR8058-201ENST00000615737 89 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 AL731566.2-201ENST00000618971 317 ntBASIC3.49□□□□□ -1.85
TREX1Q9NSU2 U7.8-201ENST00000619968 63 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms