Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.31□□□□□ -1.56
NUP88Q99567 MTCO1P48-201ENST00000448024 1096 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 MTCO3P11-201ENST00000455103 774 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.31□□□□□ -1.56
NUP88Q99567 RPL23AP24-201ENST00000458203 385 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.31□□□□□ -1.56
NUP88Q99567 AC110792.2-201ENST00000510278 224 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.31□□□□□ -1.56
NUP88Q99567 RNU6-678P-201ENST00000516832 109 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.31□□□□□ -1.56
NUP88Q99567 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NUP88Q99567 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NUP88Q99567 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.31□□□□□ -1.56
NUP88Q99567 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.31□□□□□ -1.56
NUP88Q99567 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.31□□□□□ -1.56
NUP88Q99567 AC023575.1-201ENST00000580510 358 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AP005262.1-201ENST00000582646 997 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 SNORD39.3-201ENST00000584451 71 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AC005191.1-201ENST00000603950 358 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AC112220.3-201ENST00000605502 502 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AC020634.1-201ENST00000608701 549 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AL359535.1-201ENST00000612100 1087 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC5.31□□□□□ -1.56
NUP88Q99567 AC092650.2-201ENST00000619984 902 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 AL390862.1-201ENST00000635467 1469 ntBASIC5.31□□□□□ -1.56
NUP88Q99567 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NUP88Q99567 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NUP88Q99567 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.31□□□□□ -1.56
NUP88Q99567 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
NUP88Q99567 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NUP88Q99567 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NUP88Q99567 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.3□□□□□ -1.56
NUP88Q99567 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
NUP88Q99567 RNU6-984P-201ENST00000363236 109 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 RNU1-83P-201ENST00000363426 164 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
NUP88Q99567 ZNF603P-201ENST00000405613 487 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AL080315.1-201ENST00000406055 466 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 RPS15AP38-201ENST00000413110 372 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 SNRPFP1-201ENST00000414761 252 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 MTND2P19-201ENST00000449129 1012 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.3□□□□□ -1.56
NUP88Q99567 DDX39BP2-208ENST00000453923 258 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 ISCUP1-201ENST00000454451 448 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC5.3□□□□□ -1.56
NUP88Q99567 FTH1P2-201ENST00000466086 412 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 MTND3P7-201ENST00000474435 343 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 RPL7P38-201ENST00000488396 739 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AC090819.1-201ENST00000523800 1111 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.3□□□□□ -1.56
NUP88Q99567 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.3□□□□□ -1.56
NUP88Q99567 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 MIR4716-201ENST00000579628 84 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.3□□□□□ -1.56
NUP88Q99567 AC124312.4-201ENST00000605533 310 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 AC090948.1-201ENST00000607464 549 ntBASIC5.3□□□□□ -1.56
NUP88Q99567 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.3□□□□□ -1.56
NUP88Q99567 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NUP88Q99567 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NUP88Q99567 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.3□□□□□ -1.56
NUP88Q99567 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
NUP88Q99567 ZNF37BP-203ENST00000452306 1352 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
NUP88Q99567 Y_RNA.18-201ENST00000362461 102 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 RNU6-216P-201ENST00000363282 104 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 RNU1-130P-201ENST00000363930 160 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 RNU6-553P-201ENST00000364047 96 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 RNU6-921P-201ENST00000384361 107 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 RNU6-441P-201ENST00000384545 106 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 Y_RNA.560-201ENST00000384689 102 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 SNRPEP2-201ENST00000397592 279 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC5.29□□□□□ -1.56
NUP88Q99567 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC5.29□□□□□ -1.56
NUP88Q99567 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC5.29□□□□□ -1.56
NUP88Q99567 AL356387.2-201ENST00000422272 243 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.29□□□□□ -1.56
NUP88Q99567 AC096632.1-201ENST00000427395 310 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.29□□□□□ -1.56
NUP88Q99567 RPS26P56-201ENST00000444468 240 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 AL606662.1-201ENST00000445763 553 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.29□□□□□ -1.56
NUP88Q99567 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.29□□□□□ -1.56
NUP88Q99567 AL672167.3-201ENST00000465951 960 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 AC109327.1-201ENST00000471666 403 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 AC087879.1-201ENST00000474343 374 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.29□□□□□ -1.56
NUP88Q99567 XKRY-201ENST00000510392 1100 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 NPM1P6-201ENST00000521088 871 ntBASIC5.29□□□□□ -1.56
NUP88Q99567 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC5.29□□□□□ -1.56
NUP88Q99567 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NUP88Q99567 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC5.29□□□□□ -1.56
NUP88Q99567 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.29□□□□□ -1.56
NUP88Q99567 VN1R90P-201ENST00000595717 726 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms