Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 TINAG-203ENST00000370869 782 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 MIR188-201ENST00000385034 86 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 MIR514A2-201ENST00000385131 88 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 MIR514A3-201ENST00000385132 88 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL161631.1-201ENST00000417933 486 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC007562.1-201ENST00000421819 517 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 BEND7P1-201ENST00000422058 457 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC024082.2-201ENST00000434771 238 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 HMGB1P18-201ENST00000438801 619 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL645936.1-201ENST00000441979 518 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 GAPDHP23-201ENST00000444823 993 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL590399.6-201ENST00000446396 307 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 PPIAP3-201ENST00000450588 505 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SNRPFP3-201ENST00000457792 225 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SNORD97-201ENST00000459187 142 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC011476.1-201ENST00000466725 307 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 RN7SL189P-201ENST00000468631 289 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.710-201ENST00000516975 110 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 RPL7P20-201ENST00000520308 745 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 TRIM51DP-201ENST00000529746 596 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC010928.3-201ENST00000587712 541 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC012443.1-201ENST00000605605 231 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL133255.1-201ENST00000606374 441 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL137067.2-201ENST00000621202 131 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AL160413.1-201ENST00000622780 310 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC116667.2-201ENST00000641075 823 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 5S_rRNA.29-201ENST00000641250 107 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 BDP1P-201ENST00000582658 1990 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 AC012618.3-205ENST00000637896 1496 ntBASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC140Q96MF4 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC005332.5-201ENST00000591222 2919 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 BTBD10P1-201ENST00000549824 1352 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 ZNF658B-201ENST00000602828 3408 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 CREM-203ENST00000344351 1625 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 SAMMSON-210ENST00000641260 1308 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RNU6-1287P-201ENST00000362914 107 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 SNORD115-7-201ENST00000365306 82 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RNU6-1060P-201ENST00000384664 107 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RNU4-65P-201ENST00000410473 140 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RPS7P8-201ENST00000418311 581 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL451054.2-201ENST00000420896 202 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 KRTAP2-5P-201ENST00000446109 396 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 IFNWP4-201ENST00000453148 294 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC112187.1-201ENST00000455837 479 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 ZNF519P4-201ENST00000514008 125 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 SNORA19.2-201ENST00000516013 114 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.665-201ENST00000516177 98 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RNU6-1092P-201ENST00000516955 87 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms