Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL359893.1-201ENST00000447628 1580 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 SNORA40.4-201ENST00000390971 128 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 ATP5F1P6-201ENST00000402768 767 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL138878.1-201ENST00000405131 347 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 PTGES3P2-201ENST00000407942 482 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 PPIAP17-201ENST00000438507 471 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC009220.1-201ENST00000451614 275 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 NF1P3-201ENST00000457709 450 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 SYPL1P1-201ENST00000473622 768 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 RPS4XP13-201ENST00000483219 789 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 RPL23AP55-201ENST00000498163 452 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 BTF3L4P4-201ENST00000506381 449 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC010468.3-201ENST00000508225 458 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 RNU6-202P-201ENST00000515998 96 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 RNA5SP143-201ENST00000516936 115 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC138701.1-201ENST00000524329 714 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 MTND5P21-201ENST00000531961 522 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC012254.4-201ENST00000588843 273 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC020914.4-201ENST00000597690 277 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC006023.2-201ENST00000609916 167 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL445423.1-201ENST00000609941 536 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL445567.2-201ENST00000618935 498 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AF001550.2-201ENST00000636643 217 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC068620.4-201ENST00000636730 1182 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.93□□□□□ -1.78
VPS39Q96JC1 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS39Q96JC1 AP002001.2-201ENST00000529025 1469 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 AL353746.1-201ENST00000566293 6881 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS39Q96JC1 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS39Q96JC1 RNU6-1151P-201ENST00000384684 107 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 MIR141-201ENST00000384975 95 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 RNU6-328P-201ENST00000390887 106 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 RNU6-796P-201ENST00000391086 107 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 RNU2-72P-201ENST00000411175 163 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 AL513174.1-201ENST00000423182 629 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 AL356276.2-201ENST00000435919 558 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 HMGB1P12-201ENST00000438594 598 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 ELOCP3-201ENST00000439303 348 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 RANP8-201ENST00000444720 713 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 DNAJC19P1-201ENST00000455312 319 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 BX248409.1-201ENST00000455497 255 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 RPL21P11-201ENST00000461458 483 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 VN1R17P-201ENST00000472048 1090 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 CEACAMP10-202ENST00000495431 496 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 HPRT1P1-201ENST00000509498 657 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 MTND2P7-201ENST00000521337 640 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 CYCSP29-201ENST00000533731 318 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 KPNA2P3-201ENST00000584190 848 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 KATNBL1P5-201ENST00000605015 517 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 RPL21P136-201ENST00000605378 396 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS39Q96JC1 MLECP1-201ENST00000615893 709 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 AL391261.4-201ENST00000616012 481 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms