Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 ELL2P4-201ENST00000446870 1376 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AL353746.1-201ENST00000566293 6881 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 MIR30B-201ENST00000384850 88 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 SMC4P1-201ENST00000414479 527 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 GOT2P5-201ENST00000433995 546 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC010683.1-201ENST00000473673 378 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 FTH1P24-201ENST00000503502 462 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 NPM1P52-201ENST00000518264 846 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 RANP9-201ENST00000519957 271 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC005972.3-201ENST00000606304 481 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 AC084757.4-201ENST00000616350 526 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 FP236240.3-201ENST00000623061 327 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CCDC112Q8NEF3 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC092326.2-201ENST00000624772 1561 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 RPL7P26-201ENST00000333817 754 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CRYBB2P1-203ENST00000415709 538 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AL356968.1-201ENST00000416622 474 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 MTND2P15-201ENST00000418575 892 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 RPL30P3-201ENST00000424262 333 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 NPM1P24-201ENST00000428039 894 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC008264.1-201ENST00000447612 367 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AL035404.1-201ENST00000497982 568 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC087499.8-201ENST00000578406 226 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AL161912.3-201ENST00000605404 628 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC012442.3-202ENST00000636742 206 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 AC032011.1-201ENST00000611703 1549 ntBASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CCDC112Q8NEF3 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 SNORD46.1-201ENST00000364139 104 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC006960.1-201ENST00000419980 153 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 YME1L1P1-201ENST00000429435 297 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 RPL37P1-201ENST00000432310 284 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC009969.1-201ENST00000438726 172 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 snoU13.22-201ENST00000459428 104 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 RN7SL283P-201ENST00000489055 303 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 OR5H3P-201ENST00000502817 919 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 IGKV2D-19-201ENST00000523346 262 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC007423.1-201ENST00000605009 627 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC099778.2-201ENST00000610904 211 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 AC244100.1-202ENST00000621554 382 ntBASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms