Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 Y_RNA.638-201ENST00000459374 113 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 HNRNPKP5-201ENST00000515300 253 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AL139174.1-201ENST00000531489 886 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AC006518.1-201ENST00000541449 943 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 ATP1B3P1-201ENST00000605365 821 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 HMGB1P50-201ENST00000605814 607 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AC087241.4-201ENST00000612441 480 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AC022509.4-201ENST00000621404 572 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 MIR622-201ENST00000638396 96 ntBASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
VPS13DQ5THJ4 AC008079.2-201ENST00000623543 20396 ntBASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AL360182.1-201ENST00000397433 468 ntBASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AL139413.1-201ENST00000421309 217 ntBASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AC234778.2-201ENST00000566241 354 ntBASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 HMGB1P6-201ENST00000569046 646 ntBASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 PLCE1P1-201ENST00000622094 305 ntBASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC2.09□□□□□ -2.08
VPS13DQ5THJ4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 Y_RNA.238-201ENST00000364441 102 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC010306.1-201ENST00000523223 1117 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AL359715.5-201ENST00000623431 443 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 RNA5SP31-201ENST00000411144 127 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 MTND5P24-201ENST00000438892 1767 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC104058.1-201ENST00000448028 297 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AL035404.1-201ENST00000497982 568 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AP002404.1-201ENST00000532005 451 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC009948.4-201ENST00000604692 675 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 RMST_8.1-201ENST00000610287 165 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC017007.4-201ENST00000503353 1352 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AL592148.1-201ENST00000413568 445 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC019097.1-201ENST00000424783 735 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AC015911.5-201ENST00000587076 451 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 uc_338.32-201ENST00000615087 172 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 AL158062.1-201ENST00000619632 745 ntBASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
VPS13DQ5THJ4 SNORD67-201ENST00000390833 111 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 PCBP2P3-201ENST00000509726 843 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 AC093755.1-201ENST00000512950 1023 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 HMGB1P19-201ENST00000517578 577 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 AC138393.1-206ENST00000540997 1886 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 NCAPGP1-201ENST00000505112 1814 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 AC018529.3-201ENST00000624212 2254 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 AC027290.2-201ENST00000623210 18662 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 AP000936.2-201ENST00000447151 681 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 HMGB3P14-201ENST00000494195 599 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 RPL23AP92-201ENST00000603609 255 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 LINC02471-203ENST00000641941 4752 ntBASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS13DQ5THJ4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms