Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RPS4XP6-201ENST00000477670 797 ntBASIC3.56□□□□□ -1.84
LIM2P55344 AC146944.2-203ENST00000502493 354 ntBASIC3.56□□□□□ -1.84
LIM2P55344 AC026414.1-201ENST00000504046 698 ntBASIC3.56□□□□□ -1.84
LIM2P55344 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.56□□□□□ -1.84
LIM2P55344 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIM2P55344 AC139495.1-202ENST00000513164 354 ntBASIC3.56□□□□□ -1.84
LIM2P55344 NDUFB4P12-201ENST00000513465 390 ntBASIC3.56□□□□□ -1.84
LIM2P55344 AC026402.1-201ENST00000513642 170 ntBASIC3.56□□□□□ -1.84
LIM2P55344 MTCO3P27-201ENST00000514397 196 ntBASIC3.56□□□□□ -1.84
LIM2P55344 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.56□□□□□ -1.84
LIM2P55344 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.56□□□□□ -1.84
LIM2P55344 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.56□□□□□ -1.84
LIM2P55344 AC092747.2-201ENST00000545069 983 ntBASIC3.56□□□□□ -1.84
LIM2P55344 AL161713.1-201ENST00000555538 145 ntBASIC3.56□□□□□ -1.84
LIM2P55344 BNIP3P5-201ENST00000562290 498 ntBASIC3.56□□□□□ -1.84
LIM2P55344 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.56□□□□□ -1.84
LIM2P55344 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.56□□□□□ -1.84
LIM2P55344 AC106785.1-201ENST00000565935 262 ntBASIC3.56□□□□□ -1.84
LIM2P55344 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.56□□□□□ -1.84
LIM2P55344 AC099489.2-201ENST00000574976 260 ntBASIC3.56□□□□□ -1.84
LIM2P55344 DNAJC19P3-201ENST00000594491 331 ntBASIC3.56□□□□□ -1.84
LIM2P55344 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIM2P55344 AC020978.9-201ENST00000624380 1141 ntBASIC3.56□□□□□ -1.84
LIM2P55344 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.56□□□□□ -1.84
LIM2P55344 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIM2P55344 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIM2P55344 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
LIM2P55344 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.56□□□□□ -1.84
LIM2P55344 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
LIM2P55344 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIM2P55344 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIM2P55344 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIM2P55344 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIM2P55344 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.55□□□□□ -1.84
LIM2P55344 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LIM2P55344 AC011978.2-201ENST00000569835 2054 ntBASIC3.55□□□□□ -1.84
LIM2P55344 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.55□□□□□ -1.84
LIM2P55344 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 RNU6-1257P-201ENST00000384625 110 ntBASIC3.55□□□□□ -1.84
LIM2P55344 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LIM2P55344 RNA5SP424-201ENST00000390988 115 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AL355615.1-201ENST00000406187 641 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AL356967.1-201ENST00000406305 431 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.55□□□□□ -1.84
LIM2P55344 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.55□□□□□ -1.84
LIM2P55344 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIM2P55344 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 AL139247.1-201ENST00000422768 325 ntBASIC3.55□□□□□ -1.84
LIM2P55344 RPS12P5-201ENST00000423449 371 ntBASIC3.55□□□□□ -1.84
LIM2P55344 HMGB3P5-201ENST00000428894 612 ntBASIC3.55□□□□□ -1.84
LIM2P55344 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.55□□□□□ -1.84
LIM2P55344 RPL21P110-201ENST00000433345 446 ntBASIC3.55□□□□□ -1.84
LIM2P55344 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.55□□□□□ -1.84
LIM2P55344 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.55□□□□□ -1.84
LIM2P55344 HMGB1P48-201ENST00000446155 598 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AL050341.1-201ENST00000447743 313 ntBASIC3.55□□□□□ -1.84
LIM2P55344 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.55□□□□□ -1.84
LIM2P55344 AC006480.1-201ENST00000449887 378 ntBASIC3.55□□□□□ -1.84
LIM2P55344 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.55□□□□□ -1.84
LIM2P55344 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 MRPL35P4-201ENST00000453682 566 ntBASIC3.55□□□□□ -1.84
LIM2P55344 UBDP1-202ENST00000457888 382 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AC126121.1-201ENST00000482313 553 ntBASIC3.55□□□□□ -1.84
LIM2P55344 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.55□□□□□ -1.84
LIM2P55344 HMGB1P23-201ENST00000518743 568 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.55□□□□□ -1.84
LIM2P55344 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 BNIP3P4-201ENST00000604946 565 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AC253576.2-201ENST00000618815 580 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 AL590396.2-201ENST00000636511 1041 ntBASIC3.55□□□□□ -1.84
LIM2P55344 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.55□□□□□ -1.84
LIM2P55344 MAPK10-373ENST00000641983 6772 ntBASIC3.55□□□□□ -1.84
LIM2P55344 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIM2P55344 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.55□□□□□ -1.84
LIM2P55344 CR381670.1-201ENST00000624291 1693 ntBASIC3.55□□□□□ -1.84
LIM2P55344 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIM2P55344 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LIM2P55344 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
LIM2P55344 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.54□□□□□ -1.84
LIM2P55344 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.54□□□□□ -1.84
LIM2P55344 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIM2P55344 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
LIM2P55344 OR52B1P-201ENST00000316506 909 ntBASIC3.54□□□□□ -1.84
LIM2P55344 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LIM2P55344 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.54□□□□□ -1.84
LIM2P55344 RNU6-549P-201ENST00000384433 107 ntBASIC3.54□□□□□ -1.84
LIM2P55344 SNORD65C-201ENST00000390962 71 ntBASIC3.54□□□□□ -1.84
LIM2P55344 SOD2P1-201ENST00000396543 562 ntBASIC3.54□□□□□ -1.84
LIM2P55344 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.54□□□□□ -1.84
LIM2P55344 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms