Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC023632.1-201ENST00000518463 375 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.84□□□□□ -1.79
SOX3P41225 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.84□□□□□ -1.79
SOX3P41225 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.84□□□□□ -1.79
SOX3P41225 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.84□□□□□ -1.79
SOX3P41225 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.84□□□□□ -1.79
SOX3P41225 MIR3160-1-201ENST00000577972 85 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.84□□□□□ -1.79
SOX3P41225 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.84□□□□□ -1.79
SOX3P41225 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SOX3P41225 AC099676.1-201ENST00000608886 657 ntBASIC3.84□□□□□ -1.79
SOX3P41225 MIR6867-201ENST00000610636 67 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC008147.4-201ENST00000617570 1204 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC006386.1-201ENST00000619436 415 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AL359715.5-201ENST00000623431 443 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC112484.5-201ENST00000624189 228 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AP003072.4-201ENST00000624580 310 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC010608.2-201ENST00000624830 470 ntBASIC3.84□□□□□ -1.79
SOX3P41225 AC087821.2-201ENST00000637086 450 ntBASIC3.84□□□□□ -1.79
SOX3P41225 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.84□□□□□ -1.79
SOX3P41225 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.79
SOX3P41225 MFSD8-245ENST00000641743 948 ntBASIC3.84□□□□□ -1.79
SOX3P41225 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SOX3P41225 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.8
SOX3P41225 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.84□□□□□ -1.8
SOX3P41225 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SOX3P41225 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
SOX3P41225 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SOX3P41225 AL451142.2-201ENST00000429076 2090 ntBASIC3.83□□□□□ -1.8
SOX3P41225 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 RNA5SP515-201ENST00000364570 118 ntBASIC3.83□□□□□ -1.8
SOX3P41225 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 MIR1193-201ENST00000408109 78 ntBASIC3.83□□□□□ -1.8
SOX3P41225 RN7SKP263-201ENST00000411194 309 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.83□□□□□ -1.8
SOX3P41225 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 OR4K6P-201ENST00000416478 897 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AL356095.1-201ENST00000417217 199 ntBASIC3.83□□□□□ -1.8
SOX3P41225 Z75741.2-201ENST00000417272 1167 ntBASIC3.83□□□□□ -1.8
SOX3P41225 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 HIGD1AP12-201ENST00000427832 281 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AL353597.2-202ENST00000434901 373 ntBASIC3.83□□□□□ -1.8
SOX3P41225 RPS26P40-201ENST00000435209 294 ntBASIC3.83□□□□□ -1.8
SOX3P41225 TPTE2P3-201ENST00000441562 1189 ntBASIC3.83□□□□□ -1.8
SOX3P41225 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 RPL23AP44-201ENST00000482216 473 ntBASIC3.83□□□□□ -1.8
SOX3P41225 RPS3AP6-201ENST00000484430 795 ntBASIC3.83□□□□□ -1.8
SOX3P41225 RN7SL604P-201ENST00000492589 296 ntBASIC3.83□□□□□ -1.8
SOX3P41225 BNIP3P41-201ENST00000503774 571 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 NDUFB4P12-201ENST00000513465 390 ntBASIC3.83□□□□□ -1.8
SOX3P41225 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.83□□□□□ -1.8
SOX3P41225 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.83□□□□□ -1.8
SOX3P41225 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 MTATP6P24-201ENST00000576835 677 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 AC090312.1-201ENST00000580637 348 ntBASIC3.83□□□□□ -1.8
SOX3P41225 CCDC58P3-201ENST00000590792 430 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AL020997.3-201ENST00000602843 359 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AP005137.2-201ENST00000609238 400 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AC026368.1-201ENST00000614934 690 ntBASIC3.83□□□□□ -1.8
SOX3P41225 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 AL356121.2-201ENST00000624715 780 ntBASIC3.83□□□□□ -1.8
SOX3P41225 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 BMS1P21-201ENST00000634565 365 ntBASIC3.83□□□□□ -1.8
SOX3P41225 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SOX3P41225 LINC02211-204ENST00000642024 1070 ntBASIC3.83□□□□□ -1.8
SOX3P41225 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.83□□□□□ -1.8
SOX3P41225 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.83□□□□□ -1.8
SOX3P41225 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SOX3P41225 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.83□□□□□ -1.8
SOX3P41225 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.83□□□□□ -1.8
SOX3P41225 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SOX3P41225 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
SOX3P41225 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX3P41225 AC116667.1-201ENST00000604855 2072 ntBASIC3.82□□□□□ -1.8
SOX3P41225 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms