Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RPS27AP18-201ENST00000515536 459 ntBASIC6□□□□□ -1.45
MSX1P28360 RNU6-189P-201ENST00000516120 101 ntBASIC6□□□□□ -1.45
MSX1P28360 SCARNA5-201ENST00000516201 276 ntBASIC6□□□□□ -1.45
MSX1P28360 SNORD116.3-201ENST00000517176 78 ntBASIC6□□□□□ -1.45
MSX1P28360 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6□□□□□ -1.45
MSX1P28360 AC011853.1-201ENST00000518911 454 ntBASIC6□□□□□ -1.45
MSX1P28360 AC100784.1-201ENST00000522790 310 ntBASIC6□□□□□ -1.45
MSX1P28360 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6□□□□□ -1.45
MSX1P28360 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6□□□□□ -1.45
MSX1P28360 AC026826.3-201ENST00000561747 158 ntBASIC6□□□□□ -1.45
MSX1P28360 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6□□□□□ -1.45
MSX1P28360 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6□□□□□ -1.45
MSX1P28360 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6□□□□□ -1.45
MSX1P28360 AL355297.3-201ENST00000604082 446 ntBASIC6□□□□□ -1.45
MSX1P28360 LAPTM4BP2-201ENST00000604542 446 ntBASIC6□□□□□ -1.45
MSX1P28360 ATP1B3P1-201ENST00000605365 821 ntBASIC6□□□□□ -1.45
MSX1P28360 AC004805.2-201ENST00000605382 482 ntBASIC6□□□□□ -1.45
MSX1P28360 AC009229.3-201ENST00000608056 282 ntBASIC6□□□□□ -1.45
MSX1P28360 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6□□□□□ -1.45
MSX1P28360 AL596245.1-201ENST00000618994 362 ntBASIC6□□□□□ -1.45
MSX1P28360 MIR8062-201ENST00000621515 85 ntBASIC6□□□□□ -1.45
MSX1P28360 AC111152.1-202ENST00000635848 339 ntBASIC6□□□□□ -1.45
MSX1P28360 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6□□□□□ -1.45
MSX1P28360 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6□□□□□ -1.45
MSX1P28360 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6□□□□□ -1.45
MSX1P28360 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC6□□□□□ -1.45
MSX1P28360 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
MSX1P28360 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6□□□□□ -1.45
MSX1P28360 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6□□□□□ -1.45
MSX1P28360 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6□□□□□ -1.45
MSX1P28360 AC127070.3-201ENST00000503695 3263 ntBASIC6□□□□□ -1.45
MSX1P28360 AP002370.1-201ENST00000528055 1602 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AC008627.1-201ENST00000517511 1704 ntBASIC5.99□□□□□ -1.45
MSX1P28360 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX1P28360 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 AC010624.4-201ENST00000597606 1351 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AL157777.2-201ENST00000258070 137 ntBASIC5.99□□□□□ -1.45
MSX1P28360 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX1P28360 STAG3L4-201ENST00000352103 530 ntBASIC5.99□□□□□ -1.45
MSX1P28360 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 Y_RNA.404-201ENST00000383978 102 ntBASIC5.99□□□□□ -1.45
MSX1P28360 RNA5SP122-201ENST00000384457 108 ntBASIC5.99□□□□□ -1.45
MSX1P28360 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX1P28360 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX1P28360 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 RNU2-36P-201ENST00000410361 191 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AC017078.1-201ENST00000416146 368 ntBASIC5.99□□□□□ -1.45
MSX1P28360 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX1P28360 EIF4EP1-201ENST00000422311 642 ntBASIC5.99□□□□□ -1.45
MSX1P28360 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 COL11A2P1-205ENST00000441798 676 ntBASIC5.99□□□□□ -1.45
MSX1P28360 HSFY6P-201ENST00000445573 403 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AL162388.1-201ENST00000450912 352 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX1P28360 RPL12P20-201ENST00000475538 479 ntBASIC5.99□□□□□ -1.45
MSX1P28360 RN7SL413P-201ENST00000482700 297 ntBASIC5.99□□□□□ -1.45
MSX1P28360 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX1P28360 RPL38P3-201ENST00000484463 213 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AC068305.1-201ENST00000497406 726 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX1P28360 AC073581.1-201ENST00000519036 575 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX1P28360 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 AC097467.4-201ENST00000605504 141 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AL096712.1-201ENST00000614561 159 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 ATP5A1P2-202ENST00000616464 443 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 AP001264.1-201ENST00000620602 703 ntBASIC5.99□□□□□ -1.45
MSX1P28360 AL357559.1-201ENST00000622228 274 ntBASIC5.99□□□□□ -1.45
MSX1P28360 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX1P28360 AC140479.2-201ENST00000421567 3130 ntBASIC5.99□□□□□ -1.45
MSX1P28360 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms