Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
COL6A3P12111 AL078595.2-201ENST00000605309 1780 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 MOB1AP1-201ENST00000430903 535 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.21□□□□□ -1.9
COL6A3P12111 RPL23AP70-201ENST00000483361 460 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 AP000926.3-201ENST00000497201 299 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 AC008489.1-201ENST00000524271 483 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 YWHAZP1-201ENST00000556286 722 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
COL6A3P12111 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC3.21□□□□□ -1.9
COL6A3P12111 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.21□□□□□ -1.9
COL6A3P12111 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC3.21□□□□□ -1.9
COL6A3P12111 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 USP8P1-201ENST00000494673 3183 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.21□□□□□ -1.9
COL6A3P12111 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC3.21□□□□□ -1.9
COL6A3P12111 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.21□□□□□ -1.9
COL6A3P12111 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
COL6A3P12111 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.21□□□□□ -1.9
COL6A3P12111 AL360085.1-201ENST00000604713 532 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC3.21□□□□□ -1.9
COL6A3P12111 AC125336.1-201ENST00000508893 2827 ntBASIC3.21□□□□□ -1.9
COL6A3P12111 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.21□□□□□ -1.9
COL6A3P12111 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL6A3P12111 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A3P12111 RPL23AP36-201ENST00000413895 458 ntBASIC3.2□□□□□ -1.9
COL6A3P12111 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.2□□□□□ -1.9
COL6A3P12111 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.2□□□□□ -1.9
COL6A3P12111 NTAN1P1-201ENST00000603150 646 ntBASIC3.2□□□□□ -1.9
COL6A3P12111 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A3P12111 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
COL6A3P12111 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC3.2□□□□□ -1.9
COL6A3P12111 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.2□□□□□ -1.9
COL6A3P12111 LINC02471-203ENST00000641941 4752 ntBASIC3.2□□□□□ -1.9
COL6A3P12111 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.2□□□□□ -1.9
COL6A3P12111 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A3P12111 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A3P12111 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A3P12111 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A3P12111 TCP1P3-201ENST00000414406 1498 ntBASIC3.2□□□□□ -1.9
COL6A3P12111 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A3P12111 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A3P12111 RNA5SP289-201ENST00000362332 137 ntBASIC3.2□□□□□ -1.9
COL6A3P12111 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.2□□□□□ -1.9
COL6A3P12111 AC004552.1-201ENST00000419089 348 ntBASIC3.2□□□□□ -1.9
COL6A3P12111 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.2□□□□□ -1.9
COL6A3P12111 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A3P12111 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.2□□□□□ -1.9
COL6A3P12111 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A3P12111 AC112198.2-201ENST00000426589 6996 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 Y_RNA.116-201ENST00000363292 103 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 VN1R8P-201ENST00000407739 893 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.19□□□□□ -1.9
COL6A3P12111 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.19□□□□□ -1.9
COL6A3P12111 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.19□□□□□ -1.9
COL6A3P12111 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.19□□□□□ -1.9
COL6A3P12111 PRELID3BP7-201ENST00000503606 469 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.19□□□□□ -1.9
COL6A3P12111 AC068020.1-201ENST00000594215 661 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 DNAJC19P3-201ENST00000594491 331 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC3.19□□□□□ -1.9
COL6A3P12111 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
COL6A3P12111 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.19□□□□□ -1.9
COL6A3P12111 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC3.19□□□□□ -1.9
COL6A3P12111 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.19□□□□□ -1.9
COL6A3P12111 ATF1P1-201ENST00000406040 927 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.19□□□□□ -1.9
COL6A3P12111 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC3.19□□□□□ -1.9
COL6A3P12111 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.19□□□□□ -1.9
COL6A3P12111 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A3P12111 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
COL6A3P12111 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL6A3P12111 MIR592-201ENST00000384959 97 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.18□□□□□ -1.9
COL6A3P12111 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 AL031584.1-201ENST00000447169 754 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 RN7SKP116-201ENST00000516902 319 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 AL732372.2-225ENST00000642124 456 ntBASIC3.18□□□□□ -1.9
COL6A3P12111 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
COL6A3P12111 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms