Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SDC3O75056 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.86□□□□□ -1.79
SDC3O75056 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.86□□□□□ -1.79
SDC3O75056 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC3O75056 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SDC3O75056 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
SDC3O75056 RNU6-1293P-201ENST00000384077 107 ntBASIC3.86□□□□□ -1.79
SDC3O75056 RNU6-481P-201ENST00000384194 107 ntBASIC3.86□□□□□ -1.79
SDC3O75056 SNORD3H-201ENST00000384486 214 ntBASIC3.86□□□□□ -1.79
SDC3O75056 MIR7-3-201ENST00000384898 110 ntBASIC3.86□□□□□ -1.79
SDC3O75056 DNAJC19P6-201ENST00000401853 280 ntBASIC3.86□□□□□ -1.79
SDC3O75056 PRRC2CP1-201ENST00000404428 159 ntBASIC3.86□□□□□ -1.79
SDC3O75056 RNA5SP239-201ENST00000410218 129 ntBASIC3.86□□□□□ -1.79
SDC3O75056 JKAMPP1-201ENST00000413804 919 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC068533.1-201ENST00000418542 415 ntBASIC3.86□□□□□ -1.79
SDC3O75056 RPS15AP40-201ENST00000419621 391 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 MTCO2P1-201ENST00000424648 477 ntBASIC3.86□□□□□ -1.79
SDC3O75056 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 ELOCP8-201ENST00000439309 332 ntBASIC3.86□□□□□ -1.79
SDC3O75056 UBE2V1P5-201ENST00000440070 405 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AL158053.1-201ENST00000441503 453 ntBASIC3.86□□□□□ -1.79
SDC3O75056 ELOCP15-201ENST00000442090 332 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.86□□□□□ -1.79
SDC3O75056 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 RAD23BP3-201ENST00000454157 1152 ntBASIC3.86□□□□□ -1.79
SDC3O75056 RPL7P15-201ENST00000461190 712 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC106872.2-201ENST00000494303 480 ntBASIC3.86□□□□□ -1.79
SDC3O75056 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 RNU6-334P-201ENST00000517072 102 ntBASIC3.86□□□□□ -1.79
SDC3O75056 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 AP000619.3-201ENST00000535634 1127 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 GTF2IP22-201ENST00000554443 182 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC007424.1-203ENST00000554613 687 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC079171.1-201ENST00000568788 914 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.86□□□□□ -1.79
SDC3O75056 AC012468.1-201ENST00000604888 430 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AL391497.1-201ENST00000608671 547 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AL031666.3-201ENST00000609320 1006 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.86□□□□□ -1.79
SDC3O75056 RNU6-156P-201ENST00000621869 107 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC093875.1-201ENST00000623688 504 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AP002371.2-201ENST00000624450 503 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC017104.5-201ENST00000637647 639 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC009093.8-201ENST00000641769 292 ntBASIC3.86□□□□□ -1.79
SDC3O75056 XPOTP1-201ENST00000443317 2398 ntBASIC3.86□□□□□ -1.79
SDC3O75056 AC106871.1-201ENST00000568324 3102 ntBASIC3.86□□□□□ -1.79
SDC3O75056 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
SDC3O75056 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SDC3O75056 AC024560.2-201ENST00000507981 1497 ntBASIC3.86□□□□□ -1.79
SDC3O75056 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC3O75056 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC3O75056 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC3O75056 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC3O75056 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC3O75056 AC105074.1-201ENST00000623380 3095 ntBASIC3.85□□□□□ -1.79
SDC3O75056 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
SDC3O75056 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC3O75056 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC3O75056 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC3O75056 SNORA5A-201ENST00000384111 134 ntBASIC3.85□□□□□ -1.79
SDC3O75056 OR5AW1P-201ENST00000426334 1006 ntBASIC3.85□□□□□ -1.79
SDC3O75056 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 HIGD1AP4-201ENST00000430194 280 ntBASIC3.85□□□□□ -1.79
SDC3O75056 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.85□□□□□ -1.79
SDC3O75056 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 HMGB1P16-201ENST00000447155 540 ntBASIC3.85□□□□□ -1.79
SDC3O75056 AL049829.1-201ENST00000465411 156 ntBASIC3.85□□□□□ -1.79
SDC3O75056 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.85□□□□□ -1.79
SDC3O75056 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.85□□□□□ -1.79
SDC3O75056 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.85□□□□□ -1.79
SDC3O75056 HMGN1P15-201ENST00000513870 295 ntBASIC3.85□□□□□ -1.79
SDC3O75056 RNU1-95P-201ENST00000516357 160 ntBASIC3.85□□□□□ -1.79
SDC3O75056 RNU1-128P-201ENST00000516704 160 ntBASIC3.85□□□□□ -1.79
SDC3O75056 IGHV3-32-201ENST00000519182 355 ntBASIC3.85□□□□□ -1.79
SDC3O75056 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC3O75056 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC3O75056 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.85□□□□□ -1.79
SDC3O75056 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 YPEL5P3-201ENST00000547227 352 ntBASIC3.85□□□□□ -1.79
SDC3O75056 AC074029.1-201ENST00000552531 1044 ntBASIC3.85□□□□□ -1.79
SDC3O75056 SERPINE4P-201ENST00000554978 281 ntBASIC3.85□□□□□ -1.79
SDC3O75056 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC3O75056 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms